Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09220 700 / 0 LAC7 laccase 7 (.1) AT5G01040 643 / 0 LAC8 laccase 8 (.1) AT5G01050 636 / 0 Laccase/Diphenol oxidase family protein (.1) AT5G05390 600 / 0 LAC12 laccase 12 (.1) AT2G40370 600 / 0 LAC5 laccase 5 (.1) AT2G30210 566 / 0 LAC3 laccase 3 (.1) AT2G29130 554 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 553 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 541 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G07130 538 / 0 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027747 [exp] 1076 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10017427 [exp] 578 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10019122 [exp] 573 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 570 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 562 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10023189 [exp] 556 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10026512 [exp] 556 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 553 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10009841 [exp] 540 / 0 AT5G05390 811 / 0.0 laccase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094100 [exp] 783 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.016G106300 [exp] 743 / 0 AT3G09220 676 / 0.0 laccase 7 (.1) Potri.016G106000 [exp] 738 / 0 AT3G09220 686 / 0.0 laccase 7 (.1) Potri.016G106100 [exp] 728 / 0 AT3G09220 672 / 0.0 laccase 7 (.1) Potri.008G073700 [exp] 617 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 616 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 613 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 608 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 588 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.006G087500 [exp] 575 / 0 AT5G60020 806 / 0.0 laccase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10035546 pacid=23147440 polypeptide=Lus10035546 locus=Lus10035546.g ID=Lus10035546.BGIv1.0 annot-version=v1.0 ATGAAGGGGATTATGTTCCTTCTCGCATTTGCTCTAGCCTTCCTGGCTTGCTCTCCTCCTCCTTCCGCTTCTGGAGCTGTCGTCGAGCACACTTTCGATG TGCAAAATCGGACTCTTAGGTTGTTGTGCAGCCAGCAAGTAGTGCCTACCGTGAACGGAAGTGTGCCTGGACCGACTATTCGTGTTCAAGAAGGAGACAC TCTCGTGGTTCATGTTGTCAACAATTCGCCTTACAACATTAGTATTCATTGGCATGGAATTTTTCAAATGTTGAGCGGATGGGCAGACGGTCCTAATATG ATAACCCAGTGTCCGATTCGACCAGGCGGAACTTACACTTACAAATTCACCATCACGGGTCAAGAAGGCACTCTTTGGTGGCACGCTCACGTGTCCACTC TTCGTGCCACGGTCTACGGTGCCCTCATCATCCGACCCAAATCCGGAAACCCTTACCCGTTTCCCAAACCCGACAAGGAAGTCCCTATTATCCTTGGAGA ATGGTGGAATGCTAATGTCGTCGATGTTGAGAATCAGGCTCTCGCTACCGGTGGTGGACCGAACAGCTCTGATGCCTACACCATTAACGGCTTCCCTGGA AACCTCTACCCTTGCTCCCAAACCAAAATGTTCACCCTGACAGTGGAGAAAGGAAAGACATACATGTTAAGGATCATCAACGCTGCACTCAACAACCAGC TCTTCTTCAAAATCGCCAACCACAAGTTCACAATCGTGGCAGTCGACGCAGCTTACACTACTCCGTACAAAACCGACGTCGTTCTAGTTGCCCCGGGGCA AACCACGGACATCCTCCTAGAAGCTGACCAAGCAATCGGATCCTACTACATGGCCGCTCGCCCTTACGCTAGCGCACCGGGTGTTCCATTCGCTAACACC ACCACAAGAGGCCTAATTACATACAAAGGCTCGTCGTCTTCGACTCCACAAATGCCGATTTTACCAGCATTCAACGACACTCCGACCGCATTCAAGTTCA ACTCGAACCTCACTAGTGATGCCTCTGCGAGACATTGGGTGCCTGTCCCCACTGATGTGGATAGACACATGTTCGTCACAGTCGGACTAGGGCTCGAGCC CTGCACGACTGGGAACGGGACCTGTCAGGGTCCCAACGGGCAGAAGTTTGCTGCTAGTATGAACAATGTGTCGTTCCAATTCCCAACGACTCTGTCATTG TTGCAAGCCTTTTCGGGCAAAGTTGGTGGGGTTTACACCAGGGATTTCCCTGCTACGCCATTGTTGAAGCTGGACCACACGAATCCGAACATTAACAACG ATACGCAGTTGTTGTTCGTCAAGAAGGGGACGAAAGTTACGAAGCTGAAGTATAACGAGACTGTGGAGATGGTGCTGCAGAACACTGCTATACTGACTGT CGAGAATCACCCGATCCATATCCACGGGTTCAATTTCCATGTATTGGCTCAAGGGTTTGGGAACTACGACAAAGTGAACGGTCCCAAGAAGTTCAATCTG GTTAACCCGCAAATCCGTAACACCATCGGAGTTCCAGTTGGGGGATGGGCTGTTGTCCGATTCCAGGCTAACAATCCAGGAATTTGGTTCATGCATTGCC ATCTGGATGCTCACTTGCCGTGGGGATTGGCTATGGCGTGGGAGGTGGAGAATGGGCCGACTCCGGGAACCAGGCTGCCGCCGCCGCCGGCTGATTTGCC CAAGTGCTAA
AA sequence Show only first row Show all	>Lus10035546 pacid=23147440 polypeptide=Lus10035546 locus=Lus10035546.g ID=Lus10035546.BGIv1.0 annot-version=v1.0 MKGIMFLLAFALAFLACSPPPSASGAVVEHTFDVQNRTLRLLCSQQVVPTVNGSVPGPTIRVQEGDTLVVHVVNNSPYNISIHWHGIFQMLSGWADGPNM ITQCPIRPGGTYTYKFTITGQEGTLWWHAHVSTLRATVYGALIIRPKSGNPYPFPKPDKEVPIILGEWWNANVVDVENQALATGGGPNSSDAYTINGFPG NLYPCSQTKMFTLTVEKGKTYMLRIINAALNNQLFFKIANHKFTIVAVDAAYTTPYKTDVVLVAPGQTTDILLEADQAIGSYYMAARPYASAPGVPFANT TTRGLITYKGSSSSTPQMPILPAFNDTPTAFKFNSNLTSDASARHWVPVPTDVDRHMFVTVGLGLEPCTTGNGTCQGPNGQKFAASMNNVSFQFPTTLSL LQAFSGKVGGVYTRDFPATPLLKLDHTNPNINNDTQLLFVKKGTKVTKLKYNETVEMVLQNTAILTVENHPIHIHGFNFHVLAQGFGNYDKVNGPKKFNL VNPQIRNTIGVPVGGWAVVRFQANNPGIWFMHCHLDAHLPWGLAMAWEVENGPTPGTRLPPPPADLPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09220		LAC7	laccase 7 (.1)		Lus10035546 [exp]	0	1
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	5.4	0.9485
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	5.4	0.9705
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	5.7	0.9622
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	7.7	0.9565
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10014822 [exp]	9.1	0.9366
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	11.9	0.9633
AT5G40690			unknown protein		Lus10003797 [exp]	16.5	0.9545
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	20.0	0.9580
					Lus10027919 [exp]	20.1	0.9609
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	21.2	0.9588

Compare expression of checked genes

Lus10035546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.