Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25490 125 / 1e-35 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25470 122 / 1e-34 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 120 / 5e-34 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G51990 114 / 2e-31 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT1G12610 92 / 7e-23 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT2G36450 91 / 1e-22 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT1G63030 89 / 8e-22 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G52020 89 / 2e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 87 / 5e-21 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 87 / 1e-20 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027722 [exp] 282 / 3e-97 AT4G25470 136 / 6e-40 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Lus10027414 [exp] 128 / 3e-37 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10001871 [exp] 125 / 2e-35 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 124 / 4e-35 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 122 / 9e-35 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10006332 [exp] 121 / 7e-34 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 119 / 2e-33 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031657 [exp] 116 / 7e-32 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10017829 [exp] 111 / 1e-30 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 134 / 7e-39 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 127 / 2e-36 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 123 / 2e-34 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 115 / 2e-31 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.009G147700 [exp] 115 / 4e-31 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 102 / 2e-26 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.003G121200 [exp] 94 / 3e-24 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 90 / 1e-21 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 89 / 1e-21 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 89 / 1e-21 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035566 pacid=23147612 polypeptide=Lus10035566 locus=Lus10035566.g ID=Lus10035566.BGIv1.0 annot-version=v1.0 ATGGATTACTCCTCTGTCGACGAGGGCACGATACAACCATCGTCCAGTGGGGGCAGCGGAAGCGGTCAGAATTATTCGTCGCCGTCTGCTTCTCCGCCGT CGAAGAGAAAGGCGGGGAGGAAAAAGTTCCAGGAGACACGTCATCCGATATACAAAGGCGTGCGTCGGAAAAACGGCAAGTGGGTGTGCGAAATACGGCA TCCGCAAAACAAGTCGCGAATATGGCTAGGGACGTTCACGTGCCCCGAGACTGCCGGCGAGGCCCACGACGTGGCTGCTTTGGCTCTAGGAGCCGGTACA GGGAATCTGAACTTCCCAGAGTCGGCTCACATGCTGCCTCGGGCGAGGTCGGATTACATAAGCGATATTCAATGTGCCGCGGCTACGGTGGGGACCTCGG TAAACGGTGGTCGTGGTGACGTGGCGGCGCTGTTGCTGGAAGTAGAGACTGCTAATAATAGTGGTGACACGATGATGTTTGTGGACGAGGAGGAGATTTT CAACATGCCGGTTTTGTTGGATAGTATGGCGGAGGGGTTAATAGTTACGCCGCCGGCGATGAAGAGAGGGTGGTTTTGGAATGAGGTCGTGGATGATGGG GATGAGCATTGCATGGACTTGACGTTGTGGACTAATTGA
AA sequence Show only first row Show all	>Lus10035566 pacid=23147612 polypeptide=Lus10035566 locus=Lus10035566.g ID=Lus10035566.BGIv1.0 annot-version=v1.0 MDYSSVDEGTIQPSSSGGSGSGQNYSSPSASPPSKRKAGRKKFQETRHPIYKGVRRKNGKWVCEIRHPQNKSRIWLGTFTCPETAGEAHDVAALALGAGT GNLNFPESAHMLPRARSDYISDIQCAAATVGTSVNGGRGDVAALLLEVETANNSGDTMMFVDEEEIFNMPVLLDSMAEGLIVTPPAMKRGWFWNEVVDDG DEHCMDLTLWTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	1.0	0.8754
AT1G32920			unknown protein		Lus10001526 [exp]	3.5	0.8533
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	4.0	0.8130
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	5.5	0.7819
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	6.2	0.8510
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	6.3	0.8484
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	8.4	0.8132
AT5G04010			F-box family protein (.1)		Lus10031031 [exp]	9.2	0.7888
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	9.2	0.8243
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	12.7	0.7698

Compare expression of checked genes

Lus10035566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.