Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10010 559 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 554 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 532 / 0 AAP6 amino acid permease 6 (.1) AT5G09220 526 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 513 / 3e-180 AAP4 amino acid permease 4 (.1) AT1G44100 513 / 4e-180 AAP5 amino acid permease 5 (.1) AT1G77380 501 / 2e-175 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 403 / 3e-137 AAP7 amino acid permease 7 (.1.2) AT5G40780 168 / 9e-47 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 164 / 3e-45 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037248 [exp] 909 / 0 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10033760 [exp] 729 / 0 AT1G10010 506 / 5e-178 amino acid permease 8 (.1) Lus10033759 [exp] 632 / 0 AT1G58360 533 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Lus10012444 [exp] 629 / 0 AT1G10010 535 / 0.0 amino acid permease 8 (.1) Lus10007235 [exp] 545 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 526 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 524 / 0 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10018852 [exp] 510 / 7e-179 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 501 / 2e-175 AT1G77380 680 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085000 [exp] 590 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.002G112100 [exp] 553 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G068900 [exp] 540 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 537 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 521 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 504 / 9e-177 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.006G236000 [exp] 502 / 1e-175 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.002G080066 [exp] 506 / 2e-175 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 494 / 1e-172 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 492 / 8e-172 AT1G77380 765 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035663 pacid=23147610 polypeptide=Lus10035663 locus=Lus10035663.g ID=Lus10035663.BGIv1.0 annot-version=v1.0 ATGGTGGTGGAGTCGATAAGTCCGACTAAGAGGTTCGAATTCGATTCATATGATCATGACACTGATGATGATGGACACCCCAAGCGCAAAGGGACGATGA TGACGGCAAGTGCGCATATAATAACATCGGTAATAGGATCAGGGGTGCTATCTTTGGCATGGGCTACCGCTCAATTGGGATGGATAGCTGGACCCGCTAT TCTCTTTGTGTTCGCTCTAATTACTTGGTACACCGCTCAACTCTTATGCGACTGTTATCGTTGTCCAGGCCCGCAACAAGGCACTCGTACCTACACTTAC TCTGGCGCTGTCAGAGCCCATTTAGGTGGGATTAGGTCCAAATTTTGTGGAGTAGCTCAATTCATATATCTTTTAGGATCTGCCATTGGATACACCATAG CTACACCCATCAGCATGGCTGCCATCCAAAGATCGAACTGCTTTCACCAAAAGGGACACGAAGCAGGGTGTCACACTTCCAACAACAAGTTCGTCATAAT ATTTGGAATCATGCAAATATTACTGAGCCAGCTTCCCGATTTTCACAACCTTGCCTTCATCTCCGTCATCGCGGCCATAATGTCTTTTGCCTACTCCATT ATCGGCCTTGGTCTTTGCATCGCCACGATCATAAAGAATCATGTGCATGAGAGCACAGGATTAACAGGGATTAAGATAGGGGAAGGAGGCGTTACAAGCT CAATGAAAGTGTTTGACGTTTTACAGGCCATAGGGGACATAGCATTTGCCTACAGCTACGCCCCAATCCTTCTTGAAATTGAGGACACACTAAGATCAAG TCCGCCGGAGAACGAGGTGATGAAGAAGGCATCAACGATGGGCATAGCAGTTACGACATTGTTTTACTGCCTGTGCGGCGTACTCGGGTACGCTGCCTTC GGGAACAACGCACCGGGAAACTTGCTAACCGGGTTCGGCTTCTATGACCCGTTCTGGCTCGTGGACATCGCCAACCTCTTCGTGGTGATCCACCTCGTAG GCGCGTACCAGGTATTCATCCAGCCGACGTTCCAAATAGTGGAGCAATGGTGCAACAGGAAATGGCCCGACAGCGGCTTCTTGAGAAACGAGTACCCCGT AATGGGCGGGAAGTTCAGGCTGAACGCCTTCAGGCTAGTATGGAGAACCTTGTACGTTGTCATGACGTGCGTGGTCGGGATGCTGTTCCCGTTCTTCAAC AGCGTGCTCGGTTTGCTCGGTGCGATGGCGTTTTGGCCGCTCACGCTCTATTTCCCGATCGAGATGTACAAGAAGCAGGCTGGGATTGAGAGGTTTAGTC CGACGTGGGTGTGGGTCACCGTTTTGAGTGGGGTTTGTTTGCTTGTGTCGATACTCGCCGCCGTTGGATCTGTTGATGGCATCATCAGTTCGCTTGAGAA ATACAAGCCTTTTAAGTTCGAGACTTAG
AA sequence Show only first row Show all	>Lus10035663 pacid=23147610 polypeptide=Lus10035663 locus=Lus10035663.g ID=Lus10035663.BGIv1.0 annot-version=v1.0 MVVESISPTKRFEFDSYDHDTDDDGHPKRKGTMMTASAHIITSVIGSGVLSLAWATAQLGWIAGPAILFVFALITWYTAQLLCDCYRCPGPQQGTRTYTY SGAVRAHLGGIRSKFCGVAQFIYLLGSAIGYTIATPISMAAIQRSNCFHQKGHEAGCHTSNNKFVIIFGIMQILLSQLPDFHNLAFISVIAAIMSFAYSI IGLGLCIATIIKNHVHESTGLTGIKIGEGGVTSSMKVFDVLQAIGDIAFAYSYAPILLEIEDTLRSSPPENEVMKKASTMGIAVTTLFYCLCGVLGYAAF GNNAPGNLLTGFGFYDPFWLVDIANLFVVIHLVGAYQVFIQPTFQIVEQWCNRKWPDSGFLRNEYPVMGGKFRLNAFRLVWRTLYVVMTCVVGMLFPFFN SVLGLLGAMAFWPLTLYFPIEMYKKQAGIERFSPTWVWVTVLSGVCLLVSILAAVGSVDGIISSLEKYKPFKFET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	2.4	0.8923
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	2.4	0.8832
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	4.2	0.8775
AT5G41720			unknown protein		Lus10006473 [exp]	4.9	0.8584
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	5.3	0.8289
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	5.5	0.8227
AT1G32920			unknown protein		Lus10001526 [exp]	6.5	0.8403
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10018623 [exp]	9.6	0.7623
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	10.6	0.8276
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	11.4	0.8072

Compare expression of checked genes

Lus10035663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.