Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 391 / 7e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 390 / 2e-113 transmembrane receptors;ATP binding (.1.2) AT1G27180 392 / 5e-113 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 367 / 2e-105 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 345 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 328 / 7e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41550 316 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 313 / 5e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 313 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037406 [exp] 1452 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 1425 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 1341 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 1176 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029628 [exp] 1102 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10010574 [exp] 1075 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 1058 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026961 [exp] 1048 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 1028 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002066 [exp] 470 / 6e-144 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 467 / 9e-143 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 464 / 1e-141 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 458 / 2e-141 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 463 / 5e-141 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 462 / 7e-141 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 456 / 1e-140 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 460 / 2e-140 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 458 / 1e-139 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 455 / 2e-138 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0173 [flax] [poplar] PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114 CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10035674 pacid=23147546 polypeptide=Lus10035674 locus=Lus10035674.g ID=Lus10035674.BGIv1.0 annot-version=v1.0 ATGACCCAATCCCTACCTTTGCTCCATACACCCAACTCATTCCCTGTCGCCACAATCCCCTCCGCTCTAACCTGGACCGTCCCTAATGCCTCCGGCTTTA GCTGCCATCGCCGACGTTACAATCACCGGCTGCCGCTCGAAATCGCCAGATGTGCTAACGCTGACGTTCCTCTTGTTGCAGAACCCACATCGTCTTCTTC ACCGTCCACCAAACCTCATGCGATCGGATCGAAGAGGACGAAACTGGAGTCCCTGGAGGAAGATATAGAGCGGATTGTTTATCGATGCCGGTTTCTGGCG ATCCTTGCTGTTTTCGGTTCCTTGGTTGGATCGTTGTTATGCTTTATCAAGGGTTGCGCATATGTTGCATCTTCGTTTATGCAGTATTTCGCCACTCGTG GAAAGGTGATCATATTACTGGTAGAAGCCATTGATGTGTATCTCTTGGGAACAGTGATGCTAGTTTTCGGAATGGGACTCTACGAGCTCTTTATTAGCAA TCTCAGCCCGTCAAAGATGTCGCCAGGGGAAACAATGGCAGATCGATCAAATTTATTCGGCATGTTCACTTTGAAGGAGCGACCTAAATGGTTAGAAGTG AAGACTGTGAATGAGTTGAAGACGAAGCTGGGACACGTGATCGTGATGCTCCTTCTGATTGGATTTTTCGAGAAAAGCAAGACAGCTGCTATACAATCCC CGCTTGACCTGCTTTGCTTTGCGACCTCTGTGCTTCTGTGTTCAGAGACTGACATTTCTACTCGTGGAAGAGAGAAAATGGAGCAGATGCTCGAGCACTT CGGTGAAGGAATGTCGACACTCTCCAACGCTTCTATACAATCACAAACATCGCCAACAGAACAGCCATCTGTCGGCAGTACTTTGGAGTATGAGGTTTTC TTAAGCTTTAGAGGCCCTGATGTCCGCAAAAGCTTCGCGGACTGCCTCTACAGCTATTTGGTTCGTTCCCAAATCTGCACCTTTAGGGACGAGGAAGAGC TTCGGAAGGGGGAGACGATTGCACCTTCCCTGGTCCAGGCCATCGCTGAATCAAAGATCTACATCCCAATTTTTTCGACGAGCTATGCTTCTAGCAAATG GTGCCTCCAGGAACTAGCGAAGATGGTCGAGTGTTGGAAGCAAGGGGAGGGGCACATCATATTGCCCATTTTCTATTTCGTGGACCCTAGAGATGTGCGG CATCAAGGCGGTCCTTACAAGGAAGCATTCGAGGGGCATGATGGTAAACACGACCCGAGAACTGTACAGGAATGGAGGGACTCTCTCCAGGAAGTTGGCC AAATCAAAGGATGGCACGTTACTGAATCAGACGGGCAGGGAGCTGTGATAAGTCAGGTTTTTTCTCAGGTCGAGTTGCACCTGCGGAGTATGTACACTTT AGTGACTGAGGAGTTGGTAGGAATTGATTTCCACGTACAAGAAGTGATGAGATTGTTGAATCTAGACTCCGGAGATGAGAAAGTGGTTGGGATTCATGGT ATTAGTGGGATGGGTAAAACTACCATAGCCAAAGCAGTCTATGACAGTATCTGCACAAAATTCAATCGTTGTTGTTTCCTAGAAAATGTAGGCGAAATGT TATCGAAGAAAGATGGAATTGTAGCTATACAAAGTAAAGTCATCTGTAGCATTTTGAGGGACAACGTTAAGGTAGAGGATGCTAGCCATGGAGTCAGAAC CTTACGACAGAGAGTTAGCAAATTCAAAGTCCTAATTGTTCTTGATGATGTGGATGAGAGGTTTGAATTTTGCCAAATACTAGGAAAATTAGGACACTTT TCCTCAGAAAGTAGATTCATCATCACAACAAGAGACAAAAGAGTTCTAGAGCTCCTTCAAGAATATAAGTTGTATGAACCCGAAGAAATGAGTTATGATC ATTCTCTTCAACTTTTTAGCAAGCATGTTTTTCGTATGCATTACCCTCCTGAAGATTATGCAACTCTATGTGATGAATTCGTAAAAGTTGCAGCTGGGCT TCCTTTGGCTCTTAAGGTCATAGGGTCACTCCTGTTTCGTAGAGAGAAACAGTTTTGGGAAGAGAAGTTGATGGAACTAAAAGAAATCCCTGCCACTAGC AATAAGGTGCAGCAGAGATTGAAGATTAGTTATAATGAGCTGACCTGTAATGAGAAAAAAATCTTTCTCGACATAGCTTGCTTTTTTATTGGAGAGGGTA AAGAATTGCCCGTCCATTTGTGGAGTGACAGTAAACTTTTCCCTGAGAGTGGGGTAAGGACTCTTCTTCTTAGGTCCTTAATAAAAATCAACGAGAGAAA TCAATTCTGGATGCATGATCTTCTAAGAGACCTCGGGAGATCAATTGTTATCGAGGAACATGTTAAACATCCAGGAAAACGCAGCAGGATCTGGTCCAAT GAAGACGCTTGGAGCATGTTGAAAAATGTAGAGGGAACTGACCAAGTCGAAATGCTCAGGATTGACATGCGAAATGGCAGTAATTGTAAGCTCACAGCGA AAGCATTTGAAAAGCTGACAGGGTTGAAGTATCTTGATATGGCATATTCCACACTTACTGGGGACTTCAGTGGGATTCTTCCAGATATACATTGGCTTAG GCTGCATCAATGTAGATCAGTCCCCACTGATATCAACTTGAACAAAGTGGTCATTCTTGATCTGCAAAACAGCCCTGTAGAAGATGATTGGAAGGGATGG AGTCAAATACAGGTGGCACGCAAGCTGAAAGTTATCAATCTACATGGCTGCCATAAGTTAAACAAAGTTCCTGACTTGGCCAAATGTGAGAGCCTAGAGT CGATAGATCTCACCTACTGTTCGGGGATGAGAGGGGAACTCAATATCGGCAGTTTCGGGAATTTAAAAGTATTAAGGTTTCCAGGGACAAAAATCACCGA CTTAACAGGTGACATGGGAAAGCTTCAAAAACTGCAAGAGATAAAAACGTGTACGTCGGTCTGGAGGGACCAAGAAATAGTTCTGCTCCCTACGGCCATG AAATCCCTAACTATATCTTCTCCTAAAGTTTCCAATCTTCTGGAGCTTAAAGACCTGGAGGAGCTATGCTTTATGGAATGTGCTACTCGTCCTGAAATTC CTGGGGATATATGGCAGCTGACAAAGTTGAAGACTTTAAAGCTTTACAAGTGCAATTACAACAATGGTAGTCTAATGGTGGATAAGGATGGCGCCCTTCC ATCATCTCTAACCTCCCTTATCTTTGATTGGTGTTCGGGTTTGAATACACTACCAAACCTTGCAACTCTGAATAACTTGATGGAACTAAGACTGATTGAT GTCGGAGTAACTGAAATCCATGGATTGGGAGAGCTGAGAATGCTGCAAGTCCTTGAAATTTCTTATTCCGCAGCTTTAGAACATCTCAATGGTCTCGAAA ATCTCGTGAACCTGAAAGATCTGGCCCTGAAAGATTGTGGCGGGCTAGAAGATGTACCCAGTCTATCGGATTTGATCAAGTTACAGAGTCTAGTGATCAT CAAGTGTCCCCGTCTCTCGAACATTCACGGCCTGGGTGAATTGAGGAGGTCGTTGCTAAATCTGGAAGTAAGTGGTTGTGGCAATCTGGCAAACATTGAA GACGTTGAATCACTGGAAGCACTAGAAAGTTTAACATTGGAGACGGAAAAATTACCGCCATTTCATGTTCATAGCGGTCTATGGATGCTGGCCATGGCGG AAGACGAGGATATCCCCCAATATTTGAGGCGGTACCGAAGTCCAATCAAACAATTCCCAGATCTCTCACCTCTCCAGAAACTGCGAGAACTGTACATTAT GGGATGGAGCAAATTACCCGAGGCCACAGGAATCGAAAGGTTAATATCGTTGAAATCCTTAGAAATGACGGCTTGCAAGACGATGAGGAGGTTGCCAGAT TTATCAGGCCTCAAGAACTTGGAGAGTCTCAAAGTTAGGGGATGCATACGGCTGGTTGATGTCACGGGTCTCGGCCGATTGGAATCATTGCAATTTCTGA GCATGTCTAATTGTTGGTCCCTTGAGGAGTTGCCTGATGTGTTTGGTTTGAACAAGTTGGAGGAGTTGGATGTGGAGGAATGCACCGAGCTCGTTAAGGT CATAGGCTTGGAGAAACTGGTGAAGTTGCAACGGTTACGAATGACTAATTGCAAGTCGATTAAGGAGTTGCCGGATATGTCAGGTCTCGTTAATCTGGAG GTATTGGATCTTAAGGGATGCACAAAATTGAAGAGAGTGAAAGGGCTGGAGGGATTAGAGCGTTTATGGCTTGTTAATATGGATAAAAGGTTGCTGGCCA AGTATATCCTGAAAATGGCTGTGTGGGCTGCCAGGGAATTCGCCTCATCACTGAGGAGTAGAAGGTTAGGCGATTGA
AA sequence Show only first row Show all	>Lus10035674 pacid=23147546 polypeptide=Lus10035674 locus=Lus10035674.g ID=Lus10035674.BGIv1.0 annot-version=v1.0 MTQSLPLLHTPNSFPVATIPSALTWTVPNASGFSCHRRRYNHRLPLEIARCANADVPLVAEPTSSSSPSTKPHAIGSKRTKLESLEEDIERIVYRCRFLA ILAVFGSLVGSLLCFIKGCAYVASSFMQYFATRGKVIILLVEAIDVYLLGTVMLVFGMGLYELFISNLSPSKMSPGETMADRSNLFGMFTLKERPKWLEV KTVNELKTKLGHVIVMLLLIGFFEKSKTAAIQSPLDLLCFATSVLLCSETDISTRGREKMEQMLEHFGEGMSTLSNASIQSQTSPTEQPSVGSTLEYEVF LSFRGPDVRKSFADCLYSYLVRSQICTFRDEEELRKGETIAPSLVQAIAESKIYIPIFSTSYASSKWCLQELAKMVECWKQGEGHIILPIFYFVDPRDVR HQGGPYKEAFEGHDGKHDPRTVQEWRDSLQEVGQIKGWHVTESDGQGAVISQVFSQVELHLRSMYTLVTEELVGIDFHVQEVMRLLNLDSGDEKVVGIHG ISGMGKTTIAKAVYDSICTKFNRCCFLENVGEMLSKKDGIVAIQSKVICSILRDNVKVEDASHGVRTLRQRVSKFKVLIVLDDVDERFEFCQILGKLGHF SSESRFIITTRDKRVLELLQEYKLYEPEEMSYDHSLQLFSKHVFRMHYPPEDYATLCDEFVKVAAGLPLALKVIGSLLFRREKQFWEEKLMELKEIPATS NKVQQRLKISYNELTCNEKKIFLDIACFFIGEGKELPVHLWSDSKLFPESGVRTLLLRSLIKINERNQFWMHDLLRDLGRSIVIEEHVKHPGKRSRIWSN EDAWSMLKNVEGTDQVEMLRIDMRNGSNCKLTAKAFEKLTGLKYLDMAYSTLTGDFSGILPDIHWLRLHQCRSVPTDINLNKVVILDLQNSPVEDDWKGW SQIQVARKLKVINLHGCHKLNKVPDLAKCESLESIDLTYCSGMRGELNIGSFGNLKVLRFPGTKITDLTGDMGKLQKLQEIKTCTSVWRDQEIVLLPTAM KSLTISSPKVSNLLELKDLEELCFMECATRPEIPGDIWQLTKLKTLKLYKCNYNNGSLMVDKDGALPSSLTSLIFDWCSGLNTLPNLATLNNLMELRLID VGVTEIHGLGELRMLQVLEISYSAALEHLNGLENLVNLKDLALKDCGGLEDVPSLSDLIKLQSLVIIKCPRLSNIHGLGELRRSLLNLEVSGCGNLANIE DVESLEALESLTLETEKLPPFHVHSGLWMLAMAEDEDIPQYLRRYRSPIKQFPDLSPLQKLRELYIMGWSKLPEATGIERLISLKSLEMTACKTMRRLPD LSGLKNLESLKVRGCIRLVDVTGLGRLESLQFLSMSNCWSLEELPDVFGLNKLEELDVEECTELVKVIGLEKLVKLQRLRMTNCKSIKELPDMSGLVNLE VLDLKGCTKLKRVKGLEGLERLWLVNMDKRLLAKYILKMAVWAAREFASSLRSRRLGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10035674 [exp]	0	1
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	6.0	0.8077
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10040154 [exp]	13.5	0.8273
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10043257 [exp]	19.8	0.8124
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10036409 [exp]	37.5	0.7617
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	49.5	0.7892
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	58.8	0.7427
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	61.8	0.7705
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	69.6	0.7708
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	79.4	0.7558
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	90.1	0.7566

Compare expression of checked genes

Lus10035674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.