Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 319 / 2e-104 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 173 / 6e-49 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 171 / 2e-48 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 166 / 8e-47 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT2G01060 164 / 9e-47 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 149 / 2e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 141 / 2e-37 GARP myb-like HTH transcriptional regulator family protein (.1) AT4G13640 135 / 3e-36 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 137 / 9e-36 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 134 / 6e-35 GARP Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037296 [exp] 719 / 0 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 184 / 2e-52 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 175 / 5e-49 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 172 / 4e-48 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10032778 [exp] 170 / 2e-47 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022885 [exp] 165 / 2e-45 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10039124 [exp] 156 / 1e-43 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10029607 [exp] 160 / 2e-43 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10040569 [exp] 150 / 1e-40 AT3G13040 157 / 7e-44 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000700 [exp] 405 / 2e-138 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 376 / 2e-126 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 177 / 2e-50 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G048000 [exp] 175 / 4e-49 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.018G151400 [exp] 172 / 4e-48 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.002G257800 [exp] 167 / 7e-46 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.006G191000 [exp] 164 / 1e-45 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 162 / 1e-45 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 160 / 4e-45 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 147 / 2e-39 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035705 pacid=23147387 polypeptide=Lus10035705 locus=Lus10035705.g ID=Lus10035705.BGIv1.0 annot-version=v1.0 ATGAAGAGCCAGAGTGTTGTATCCGTTATGAAAAGTGAATCTCCTGGACCATTCTGCGCATCCCTATCACCAATTCACAACTTCTTCGGCGTTGAATCTG ATGGAAACAACAACAGTACACTCACCAGTGATCAATGCTCATCATCATCTTCACGGCCATCGCCTTTCATACGATCCGATTCCCTCAACTCTTCCAACAG CTTGCGATTGTCCACCGCAGCAGCAGAACATGAGAAATGCTCCGGTCCAGATAGCCCTCTTTCTTATGGCTCCCAAGTTTCCAAGGGGGCCACATTCCAG CGCTCTTCTGTGTTCTGCACCAGTTTGTACTCGTCGTCTTCGTTAGGAAAGCAGCTGCCTTTTCTTCCACATCCTCCTCCTATTGCTGCTCCCTGCAGCT CCCACCAATCCCTTTCAGCAGTTGTTGCCTCGACGAAATCTCCACCGATTTTTAGTGACGATATGATGAGCAACAACAGCACCTATGACGACGACCAATC TGATGCGCTTATGAAGGACTTCCTTAATTTGGCAGGAGATGCTTCCGAAGGAAGTTTTCATGGTGGAATGAGCTGTGCCAATGATTCTCTGGCATTCTCA GAACACTTGGAACTACAATTTCTGACCGATGAACTTGACATGTCGATTACTGACCATGGTGAAAATCCAAGGCTTGATGAAATTTATGGAACACCTGAAA CCTTACCAGAAAAACCTGTCACGGGATCGACCTCGGATGAAAACCACGCCTCTGCTGCGCCACCTGTCGATGCGCTTTCTGGTCAACCCTCTCCCACGGG TGCTGCTGCTGCTCACAAGCCAAGAATGAGATGGACACCTGAGCTGCATGAATCTTTTGTAGCAGCTGTTAACAAGCTTGATGGAGCTGAAAAGGCTACT CCCAAGGGTGTACTAAAGCTCATGAATGTTGAAGGCTTAACAATTTATCATGTGAAAAGCCACTTACAGAAATACCGCATGGCGAAGTATTTACCAGAGA GAAAAGAAGAGAAGAAGAATTCCAGTTCGGAAGAAAAGCAACCAACTTTTAGCAGCCTTGAATTTGATGGCAGGAGAAAAGGGAACCTTCAAATATCAGA GGCATTGCGTATGCAAATGGAAGTCCAGAAGCAGCTGCACGAACAGCTTGAGGTGCAAAAAGCACTTCAGGTACGTATAGAAGAACATGCAAGATACCTA GAGAAGATGCTGGAGGAGCAGCAGAAAGCCGGGACAGCATTAATGTCTCCCAAAAGCCTCAATGTTCCATCTCAAGAGTCCCAACCAACTTCTGTCGAGT CAGATTCGAAAGCCGACTCGGCATCAACATCATCCCCTTCTCCGTCGACAGGCGGAGAAGTCGGAGACGGTAATAAGCGAGAGTGCAAGAAAAGAATCCG CCTAGAAGAGGAAGAAGAAAAAAGGGATGTTGAGGTTGGAAATGTAGTGGTATAA
AA sequence Show only first row Show all	>Lus10035705 pacid=23147387 polypeptide=Lus10035705 locus=Lus10035705.g ID=Lus10035705.BGIv1.0 annot-version=v1.0 MKSQSVVSVMKSESPGPFCASLSPIHNFFGVESDGNNNSTLTSDQCSSSSSRPSPFIRSDSLNSSNSLRLSTAAAEHEKCSGPDSPLSYGSQVSKGATFQ RSSVFCTSLYSSSSLGKQLPFLPHPPPIAAPCSSHQSLSAVVASTKSPPIFSDDMMSNNSTYDDDQSDALMKDFLNLAGDASEGSFHGGMSCANDSLAFS EHLELQFLTDELDMSITDHGENPRLDEIYGTPETLPEKPVTGSTSDENHASAAPPVDALSGQPSPTGAAAAHKPRMRWTPELHESFVAAVNKLDGAEKAT PKGVLKLMNVEGLTIYHVKSHLQKYRMAKYLPERKEEKKNSSSEEKQPTFSSLEFDGRRKGNLQISEALRMQMEVQKQLHEQLEVQKALQVRIEEHARYL EKMLEEQQKAGTALMSPKSLNVPSQESQPTSVESDSKADSASTSSPSPSTGGEVGDGNKRECKKRIRLEEEEEKRDVEVGNVVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	0	1
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	6.1	0.8090
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	7.3	0.7510
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	8.4	0.7500
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	10.0	0.6687
AT5G55060			unknown protein		Lus10043118 [exp]	11.3	0.7746
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	12.4	0.7745
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	13.1	0.7750
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10000060 [exp]	14.1	0.7358
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	19.5	0.7909
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	23.2	0.7338

Compare expression of checked genes

Lus10035705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.