Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59710 306 / 3e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 221 / 2e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 215 / 4e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 160 / 3e-47 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 159 / 2e-46 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 156 / 1e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50130 63 / 5e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 63 / 6e-11 NOL NYC1-like (.1) AT4G09750 62 / 7e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 59 / 8e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037320 [exp] 391 / 4e-138 AT3G59710 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 364 / 6e-127 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032524 [exp] 205 / 2e-64 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 204 / 1e-63 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 188 / 1e-57 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040932 [exp] 167 / 2e-49 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 163 / 4e-48 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019546 [exp] 162 / 6e-48 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 160 / 3e-47 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127700 [exp] 350 / 2e-121 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G110200 [exp] 221 / 1e-70 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G108400 [exp] 214 / 6e-68 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G080000 [exp] 167 / 6e-50 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 159 / 1e-46 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 159 / 2e-46 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 158 / 2e-46 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 157 / 7e-46 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 155 / 3e-45 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 154 / 2e-44 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035736 pacid=23147503 polypeptide=Lus10035736 locus=Lus10035736.g ID=Lus10035736.BGIv1.0 annot-version=v1.0 ATGGAAGCAAAACAGCTGGTGCTGGTGGAGGACCCTGTTTCTGATGCCCCTGTTCCTTCCTCTGACAGGTGGTGGTCGAAGGAGACGGTGGCAGTAGTGA CCGGCGGGAACAAGGGAATCGGGTTCGCGGTGGTGAAGAAGCTGGCGGAGCTGGGCCTCACCGTCATCTTAACGGCCAGGGATGTCGAAAGAGGGAATCA GGCCGTTGAGACGCTGAGATCCCGCCATGGTTTCCACGGCGTCGTCCACTTCCGCCACCTCGATGTTTCAGATCCTCGTTCCATCGAAACCTTCGTTTCC CAATTCCGTCAGGATTTCGGTTTCTTGGACATTCTGGTGAACAATGCAGCAGTATCATTCAACCAGATAAACGAGAACTCAGTGGACCATGCAGAGACAG TACTGAAAACCAACTTCTACGGTCCAAAGCTACTAATAGAATCCCTCCTCCCTTTCTTCCGTCGATCTTCTTCACACAGCCGCATCCTCAACCTCAGCTC CAGGCTCGGCTCCATCAACAAAGTGAGGAACGGGGGATTAAAGGCGATGCTCGAAAGCGAAACGCTGACGGAGGAGGAGATAGAGGACAAAGTTGTGAGG AAGTTTCTTAACGACGTTAAGGAAGGGACGTGGGAAGGTCAAGGGTGGCCCGCTTTGTGGACCGACTACGCCGTCTCCAAACTGGCCCTCAACGCCTACT CCAAGATTTTAGCCGGCCGGCATTCCGGCCTGGGGTTGAGTGTCAACTGCTTCTGCCCTGGATTCACTCAGACTTCCATGACCGGTGGGAAAGGGACTCA TCGCGCCGACGACGCTGCTGAGTTCGGAGTTTCCCTTGCTTTGCTTCCCCCTCACTTGCTCACGTCCGGCAACTTCTACCTCGGGTTCTGTAATCGCGGC GTTAATCGTTCCAAGCTTTAG
AA sequence Show only first row Show all	>Lus10035736 pacid=23147503 polypeptide=Lus10035736 locus=Lus10035736.g ID=Lus10035736.BGIv1.0 annot-version=v1.0 MEAKQLVLVEDPVSDAPVPSSDRWWSKETVAVVTGGNKGIGFAVVKKLAELGLTVILTARDVERGNQAVETLRSRHGFHGVVHFRHLDVSDPRSIETFVS QFRQDFGFLDILVNNAAVSFNQINENSVDHAETVLKTNFYGPKLLIESLLPFFRRSSSHSRILNLSSRLGSINKVRNGGLKAMLESETLTEEEIEDKVVR KFLNDVKEGTWEGQGWPALWTDYAVSKLALNAYSKILAGRHSGLGLSVNCFCPGFTQTSMTGGKGTHRADDAAEFGVSLALLPPHLLTSGNFYLGFCNRG VNRSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	0	1
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	1.4	0.9871
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	2.4	0.9841
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	2.8	0.9891
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	4.0	0.9783
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	5.3	0.9811
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	5.9	0.9827
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	6.3	0.9831
AT1G53050			Protein kinase superfamily pro...		Lus10018601 [exp]	6.6	0.9755
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	6.9	0.9793
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	7.3	0.9812

Compare expression of checked genes

Lus10035736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.