Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16740 446 / 5e-155 Transmembrane amino acid transporter family protein (.1) AT5G02170 240 / 3e-73 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 233 / 2e-70 Transmembrane amino acid transporter family protein (.1) AT2G41190 219 / 2e-65 Transmembrane amino acid transporter family protein (.1) AT3G09340 218 / 4e-65 Transmembrane amino acid transporter family protein (.1) AT2G39130 218 / 9e-65 Transmembrane amino acid transporter family protein (.1) AT3G09330 216 / 3e-64 Transmembrane amino acid transporter family protein (.1) AT3G54830 203 / 3e-59 Transmembrane amino acid transporter family protein (.1) AT5G15240 198 / 2e-58 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 189 / 3e-55 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010855 [exp] 224 / 4e-66 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 202 / 4e-60 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 193 / 3e-56 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 192 / 4e-56 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 194 / 5e-56 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 194 / 1e-55 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10030683 [exp] 188 / 1e-54 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10003817 [exp] 182 / 7e-51 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 180 / 9e-49 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146700 [exp] 483 / 1e-168 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 466 / 3e-162 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1) Potri.002G233100 [exp] 407 / 2e-139 AT5G16740 398 / 2e-136 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 232 / 5e-70 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 230 / 2e-69 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 229 / 8e-69 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 216 / 3e-65 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 208 / 2e-62 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 189 / 5e-55 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 187 / 3e-54 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035738 pacid=23147514 polypeptide=Lus10035738 locus=Lus10035738.g ID=Lus10035738.BGIv1.0 annot-version=v1.0 ATGCAGGCGGCTGGTAGTAGTGTGGAATTGGATGGCCGGCGCCGGTGCAGTGTTTGCGTGGAGGACAACGATGAGCAGCACAAGGTGTGCAACTGCGGCG TCGACGATCATCATGATCAAATTTCTGATCATGTCGTACAACAACAGCAACAACTTAATCATCATCGTCATCAAGCAAATGGCTCCTTTGCCCATGCCGT CATCAACATGATTGGAATGCTCATAGGGCTAGGGCAATTATCGACACCATACGCACTCGAAAACGGAGGATGGGCATCAATCTTCCTCCTCCTGACACTA GCTCTCATCTGCACTTACACCTCTCACCTCCTCGCCAAATGCCTCCACAGCTCCCCAAAATCCCAATCCTACGCGGACATCGGCCGCCACGCCTTTGGCT CGAAAGGGAAACTCTTGGCTTCGACATTCGTCTATCTCGAGATCTTCATGGCCCTCGTCTCCTACACCATCTCCCTCCACGACAACCTCGCCACCGTCTT TTCATCAGCCACTTCCCTCCGATTCGGATTCGCTAATTGGATCTCCACCTCGCAGCTCCTGACCCTTGCGGCGGTGCTGGTGGCCTTGCCGAGCTTGTGG ATAAGGAACCTCTCTTCCATCTCCTTCTTGTCCTCCGCGGGGATACTTATGTCATTTGTTATTTTCGGGTGTGTCGTGTTGACGGCTGCGTTTGGAGGCG TGGCGGCCAACCATAGTATACCGGTGATTCGGGTTCGGAATATTCCGGCCGTGTCGGGACTGTTCGTGTTTAGCTACGGTGGCCATATTGTTTTCCCTAA TCTCTACAAGTCCATGAAAGATCCTACCAAGTTTACCAAGGTATCAATAGTGAGCTTTGGAGCCGTGACGGCACTCTACGCATGCCTAGCCTTCCTAGGA GCCAAGATGTTCGGGCCGGGAGTGAGCTCTCAGATCACCCTCGACCTCCCTCCACACCTCATCTTCACCAAGGTCGCGCTATGGGCCACCGTCATCACTC CCATGACGAAGTACGCCCTTGAGTTTGCACCACTTGCCATCCAGCTCGAGCAGGCCCTCCCAAGCTGGATGACACCCCGAACGAAGATGGTCGTTCGAGG AGCAGTGGGGTCGGTCCTGCTCCTTGCAATACTAGTTATCGCGCTCAGCGTGCCCTACTTCGAGCACGTGCTTGGTCTCACGGGGTCCCTTGTGACGGTT AGCATCTGTGTGGTGCTGCCGTGTGCGTTCTATTTGAAGATCTCCCATGGGAAAGTAGGGAGATTTGTTTTGGTTCTGAATTGGGCTTTGATTGGGATTG GGTGCGTTCTCGGTGCGACTGGCACGGTTTCTTCGTCAAAATTGCTTATAAGCAGTCTTCGGAGAAGTCATAATCTTCACTCATCTTGA
AA sequence Show only first row Show all	>Lus10035738 pacid=23147514 polypeptide=Lus10035738 locus=Lus10035738.g ID=Lus10035738.BGIv1.0 annot-version=v1.0 MQAAGSSVELDGRRRCSVCVEDNDEQHKVCNCGVDDHHDQISDHVVQQQQQLNHHRHQANGSFAHAVINMIGMLIGLGQLSTPYALENGGWASIFLLLTL ALICTYTSHLLAKCLHSSPKSQSYADIGRHAFGSKGKLLASTFVYLEIFMALVSYTISLHDNLATVFSSATSLRFGFANWISTSQLLTLAAVLVALPSLW IRNLSSISFLSSAGILMSFVIFGCVVLTAAFGGVAANHSIPVIRVRNIPAVSGLFVFSYGGHIVFPNLYKSMKDPTKFTKVSIVSFGAVTALYACLAFLG AKMFGPGVSSQITLDLPPHLIFTKVALWATVITPMTKYALEFAPLAIQLEQALPSWMTPRTKMVVRGAVGSVLLLAILVIALSVPYFEHVLGLTGSLVTV SICVVLPCAFYLKISHGKVGRFVLVLNWALIGIGCVLGATGTVSSSKLLISSLRRSHNLHSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16740			Transmembrane amino acid trans...		Lus10035738 [exp]	0	1
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	6.1	0.9214
					Lus10006918 [exp]	8.5	0.9208
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	10.4	0.9208
					Lus10040397 [exp]	12.0	0.9208
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	13.4	0.9208
					Lus10007508 [exp]	14.7	0.9208
AT1G04670			unknown protein		Lus10004041 [exp]	15.9	0.9208
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	17.0	0.9208
					Lus10027066 [exp]	18.0	0.9208
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009400 [exp]	18.8	0.9191

Compare expression of checked genes

Lus10035738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.