Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21070 505 / 0 Nucleotide-sugar transporter family protein (.1) AT1G76670 499 / 8e-179 Nucleotide-sugar transporter family protein (.1) AT5G42420 498 / 2e-178 Nucleotide-sugar transporter family protein (.1.2) AT4G09810 283 / 6e-94 Nucleotide-sugar transporter family protein (.1) AT1G34020 271 / 2e-89 Nucleotide-sugar transporter family protein (.1) AT4G39390 268 / 4e-88 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT2G28315 178 / 4e-53 Nucleotide/sugar transporter family protein (.1) AT2G30460 173 / 5e-51 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 171 / 5e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT5G55950 99 / 3e-23 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036606 [exp] 618 / 0 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 278 / 1e-91 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 273 / 9e-90 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 257 / 1e-83 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 244 / 3e-78 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10021464 [exp] 176 / 4e-52 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 174 / 2e-51 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 172 / 7e-50 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 156 / 2e-44 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000500 [exp] 536 / 0 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 531 / 0 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.007G077900 [exp] 286 / 4e-95 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G086700 [exp] 285 / 1e-94 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G196500 [exp] 279 / 2e-92 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 276 / 3e-91 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G011100 [exp] 186 / 6e-56 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 183 / 1e-54 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 176 / 5e-52 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 173 / 7e-51 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10035824 pacid=23147446 polypeptide=Lus10035824 locus=Lus10035824.g ID=Lus10035824.BGIv1.0 annot-version=v1.0 ATGGAGATCGAGACTAAGAAGCCCGCGGTTTCCGACATGGGAGCTTGGGCAATGAATGTCATTAGCTCAGTCGGTATCATCATGGCTAACAAGCAGCTCA TGTCAGCTGGCGGCTATGGTTTCGCGTTCGCGACCACGTTGACTGGTTTCCACTTTGCTGTGACGGCGCTCGTAGGCATGGTCTCGAATGCTACTGGATT ATCAGCATCGAAGCACGTCCCAATGTGGGAACTCCTCTGGTTCTCCATCGTTGCAAATACCTCTATCACTGGAATGAACCTAAGTCTCATGCTGAACTCT GTCGGCTTCTATCAGATTTCTAAACTCAGCATGATCCCAGTTGTCTGTGTGATGGAATGGATCCTTCACAGTAAGCAATACTCAAGAGAAGTCAAGTTAT CTGTTATGGTTGTTGTTGTTGGCGTTGGTGTTTGCACTGTGACCGATGTCAAAGTTAATGCCAAAGGTTTTATATGTGCTTGTGTAGCTGTTCTCTGTAC ATCATTGCAGCAAATTACCATAGGTTCTCTGCAAAAGAAGTATTCTATTGGATCATTTGAACTTCTGAGCAAGACTGCTCCAATTCAAGCAGTCTCTCTT CTTGTTCTCGGACCATTCATCGATTACTATCTCAATGGCAAGTTCATAACGAACTACAAGATGACTACCGGAGCTACTCTCTTCATCCTTCTATCATGTT CGCTAGCAGTGTTCTGCAACATGAGCCAGTATCTTTGCATAGGAAGATTCTCTGCAGTTTCGTTCCAGGTTTTAGGTCACATGAAGACTGTATGCGTCCT GACGTTGGGATGGCTGCTTTTCGATTCGCAGCTAACGCTGAACAACATTGCTGGGATGGTACTTGCCGTCCTTGGTATGGTGGTTTATAGTTGGGCAGTT GAAGCTGAGAAGAGTTCCAACAGCAGCAGCAAGTTGCCAAAGCACAGTCTTACTGAGGAGGAAATCAAGCTATTGAAGGAAGGAGTTGAGAAAGGCACAT TTATTAAGGACGTTGAACTTGGCGATTCCAAAGTAGCATTGAAATAG
AA sequence Show only first row Show all	>Lus10035824 pacid=23147446 polypeptide=Lus10035824 locus=Lus10035824.g ID=Lus10035824.BGIv1.0 annot-version=v1.0 MEIETKKPAVSDMGAWAMNVISSVGIIMANKQLMSAGGYGFAFATTLTGFHFAVTALVGMVSNATGLSASKHVPMWELLWFSIVANTSITGMNLSLMLNS VGFYQISKLSMIPVVCVMEWILHSKQYSREVKLSVMVVVVGVGVCTVTDVKVNAKGFICACVAVLCTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSL LVLGPFIDYYLNGKFITNYKMTTGATLFILLSCSLAVFCNMSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSQLTLNNIAGMVLAVLGMVVYSWAV EAEKSSNSSSKLPKHSLTEEEIKLLKEGVEKGTFIKDVELGDSKVALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	0	1
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	1.0	0.9732
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	3.5	0.8805
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	3.5	0.8783
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	4.6	0.8899
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	5.7	0.8732
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	6.8	0.8945
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	7.5	0.8554
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	9.5	0.8790
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	13.7	0.8694
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	15.3	0.8136

Compare expression of checked genes

Lus10035824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.