Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 497 / 4e-172 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 493 / 5e-169 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 474 / 2e-164 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 414 / 5e-139 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 395 / 1e-130 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 243 / 3e-71 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 233 / 2e-69 GRAS RGL1 RGA-like 1 (.1) AT2G29060 231 / 5e-67 GRAS GRAS family transcription factor (.1) AT3G03450 224 / 1e-65 GRAS RGL2 RGA-like 2 (.1) AT5G52510 225 / 2e-65 GRAS SCL8 SCARECROW-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036623 [exp] 972 / 0 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 511 / 3e-177 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 502 / 3e-173 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 490 / 4e-169 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 442 / 9e-150 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 437 / 7e-148 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10042776 [exp] 392 / 4e-130 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 390 / 3e-129 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10003772 [exp] 373 / 1e-126 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409500 [exp] 780 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 747 / 0 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.014G164400 [exp] 517 / 4e-179 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 510 / 1e-176 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 442 / 8e-150 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 426 / 1e-143 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.002G073400 [exp] 403 / 3e-134 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 401 / 2e-133 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 254 / 4e-76 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 253 / 1e-75 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10035840 pacid=23147611 polypeptide=Lus10035840 locus=Lus10035840.g ID=Lus10035840.BGIv1.0 annot-version=v1.0 ATGGATACACAGCAGCTATTCGGGTTCGGTACTGTGACTGGTTCGGGCATGTCTTACTCGTCTCCTTACCCGACTGTTTCCTCTTTGCCTGATAGAAGAC TAATGGGTTCCTTAAAGTTTGAGATAGGGAACTCACCTACCTCCTCATTTTCAACTCAGTTGGATAATGAAACTGTTAGTTCAGTGAGTGATAGCCACGA ACAACCCAGCTCCACAAGGTCTCTCTCTGGGTTCAGCCCATCTGGAAACTCTTCTGCTGAATCCAACAGTTACTTGCACCAGAGGACTACTAGCTTGCAG CTCTTTCCTTGTTTAACTTCCACGAGTCATTCAAGCCCAGACATGAAACAGGCATTGCAGCAATTGGAGACTGCTCTGATGGGACCTGATGATGAGGACA TGGGTGAACCTAATGATTATCATGGTGAAAGTGGGAAGCTACACGCACAAGGTCAGGAAAGTAGCAGCAGGGCATGGGGCCAAGACGAAGGCCGTGATTC TCGGCCCCGAGCAGCAACGTTGATGTCCCATCCCCGGCAAGTAGAAGCAGATGCTCCTGTTGAGAAACGTCGTAAAGCTATGGCAGAAGAATCATCAAGA TTACAAAGTTCCCAGCCTGGCAACCTGAAACAATTGTTAATTGAATGTGCCAAGGCTATTGCTGAAAACAATATGGGTTATTTTGAAAACCTGGTTGATA AGGCTAGAGGTGAGGTGTCCATCACTGGGGAACCAATTCAACGCTTAGGTGCTTATCTAGTTGAGGGATTGGTGGCGAGGAAGCAATCATCAGGCAGTAA CATCTACCGCGCCCTGAATTGTAGGGAGCCTGAAAGCAAAGACTTGTTATCGTACATGCAGATTCTGTATGAAATCTGCCCATACCTCAAGTTTGGATAC ATGGCAGCAAATGGTGCCATTGCTGAAGCTTGCAGGAATGCTGAACGCATACACATAATTGACTTCCAGATTGGTCAAGGGACGCAATGGATGACTCTTC TTCAAGCTCTTGCAGCCAGACCAGGTGGTGCTCCACATGTACGCATCACCGGTATTGACGACCCTCTCAATAAGTATGCTCGAGGTGGAGGATTAGACGC AGTTGGGAAGAGATTGGCAGCACTTTCCGAGAAGTTCAACATCACAGTTGAGTTCCAAGGCCTTCCTGTCTTCGCCCCCGATGTTACGCGAGAAATGCTT GATGTCCGACAAGGGGAGGCCCTGGCAATTAACTTGCCGTTACAGTTGCACCACACTCCTGACGAGAGCGTGGATGTGAATAACCCGAGAGACGGGCTTC TCCGAATGATCAAGTCACTTAATCCCAAGGTAACCACGTTGGTGGAGCAGGAATCAAACACCAACACAACTTCTTTCCTCACCAGGTTTGTAGAGACCCT GGAATACTACCTGGCCATATTTGAGTCGATTGACGTGACCCTCGCTAGGGATAGGAAAGAGCGTATTGGGTTGGAACAGCATTGCTTGGCTAGGGACATG GTGAATGTGGTTGCCTGTGAGGGAAGAGAACGAGTTGAGCGACATGAAATGTTTGGGAAATGGAAATCTAGATTCACCATGGCTGGGTTCAAACAGTACC CTTTAAGTTCCTATGTGAACTCGGTGATTAAGAGCTTGCTCAAATGTTACTCGGAGCATTATACTTTGGTGGAGAAAGATGGAGCCATGTTGTTGGGTTG GAAAGAAAGGAACTTGATCTCTGCTTCTGCCTGGTACTAG
AA sequence Show only first row Show all	>Lus10035840 pacid=23147611 polypeptide=Lus10035840 locus=Lus10035840.g ID=Lus10035840.BGIv1.0 annot-version=v1.0 MDTQQLFGFGTVTGSGMSYSSPYPTVSSLPDRRLMGSLKFEIGNSPTSSFSTQLDNETVSSVSDSHEQPSSTRSLSGFSPSGNSSAESNSYLHQRTTSLQ LFPCLTSTSHSSPDMKQALQQLETALMGPDDEDMGEPNDYHGESGKLHAQGQESSSRAWGQDEGRDSRPRAATLMSHPRQVEADAPVEKRRKAMAEESSR LQSSQPGNLKQLLIECAKAIAENNMGYFENLVDKARGEVSITGEPIQRLGAYLVEGLVARKQSSGSNIYRALNCREPESKDLLSYMQILYEICPYLKFGY MAANGAIAEACRNAERIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLNKYARGGGLDAVGKRLAALSEKFNITVEFQGLPVFAPDVTREML DVRQGEALAINLPLQLHHTPDESVDVNNPRDGLLRMIKSLNPKVTTLVEQESNTNTTSFLTRFVETLEYYLAIFESIDVTLARDRKERIGLEQHCLARDM VNVVACEGRERVERHEMFGKWKSRFTMAGFKQYPLSSYVNSVIKSLLKCYSEHYTLVEKDGAMLLGWKERNLISASAWY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	0	1
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	1.0	0.9751
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	2.0	0.9722
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	2.2	0.9625
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	2.4	0.9666
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	2.6	0.9597
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	4.0	0.9595
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	4.2	0.9587
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	5.3	0.9659
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	5.5	0.9537
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	5.5	0.9602

Compare expression of checked genes

Lus10035840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.