Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 867 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 728 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 658 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 583 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT4G08620 577 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 575 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 556 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 514 / 6e-176 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 453 / 2e-151 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 450 / 3e-150 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025767 [exp] 1196 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 890 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 890 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 726 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10019389 [exp] 682 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10043247 [exp] 659 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 624 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 610 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 588 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 894 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 884 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 769 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 749 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.005G213500 [exp] 664 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 661 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 656 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 635 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092500 [exp] 601 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G167300 [exp] 592 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10035896 pacid=23141237 polypeptide=Lus10035896 locus=Lus10035896.g ID=Lus10035896.BGIv1.0 annot-version=v1.0 ATGGCGGTGATAATAAACACAAGTGGTGATGATGAGGTGCACAGAGTCTGCCTGCCGCCACAGAGAACGACAGCGCAGAAGCTGAAACAGAGGCTTGGAG AAATCTTCTTCCCTGATGACCCGCTTTACAGGTTTAAGAACCAGACAGTGTACAAGAAGCTGATACTGGGTCTTCAGTTCCTGGTTCCTGTTTTTGAATG GGGACCTCACTACACTCTCGACCTCTTCAAGTCTGATGCCGTCTCTGGTCTCACCATTGCCAGCCTTGCTATCCCACAGGGTATCAGCTACGCAAAGCTA GCGAAATTGCCTCCAATCATTGGTTTATATTCGAGCTTTGTGCCACCGTTGATATACTCGGCGCTGGGGAGCTCAAAGCATCTAGCGGTGGGACCAGTGT CGATAGCATCCTTAGTAATGGGTTCGATGCTTACCCAGGAAGTGTCTCCTACAAATGACCCAGCGCTCTACTTGAAACTGGCATTGACGTCCACGTTCTT CGCGGGTATGTTTCAGGCTTGCCTTGGGGTATTGAGATTAGGGGAACCCCTGGTTGTTTTCACTGCCGGTGCGGCGGTGGTTGTTTCCCTTCAGCAGCTT AAAGGGCTGCTTGGAATCGTCAGCTTCACCAGCAAGATGCAGATTGTTCCTGTAGTTTCATCTGTTTTCCAGAACAGGGATGAATGGTCAGTGCCAACAG CAATGATGGGACTCGTGTTTCTGGTGATTCTTTTGTCAACAAGGCACATAAGCATGAAGAATCCGAAACTTTTCTGGGTGTCAGCAGCAGCACCATTGAC GTCTGTGGTAGCTGCAACACTTGCCAGTTTCATTTTCAGCTCTAAGCTCCATGGTGTCAAAATTATTGGTCATCTGCCAAAGGGATTGAATCCTCCTTCC CTGAGTATGCTACTATTCAGCTCCTCTCATCTGGCACTCGCCATCAAGACTGGCCTCGTCACTGGAATCTTGTCTCTCACTGAAGGAATTGCAGTGGGGA CAACGTTTGCATCGCTAGGGAACTACCAAGTGGACGGGAACAAAGAAATGATGGCAATCGGGGCAATGAACATGGTCGGATCCTGCACATCATGCTACGT GACGACCGGTTCATTCTCGAGATCAGCAGTGAACTACAACGCTGGAGCCAAAACCGCAATGTCCAACGTAGTCATGGCATCGGCAGTGCTAGTAACCCTG TTGTTCTTGATGCCCCTATTCCACTACACCCCTGAAGTGATCCTGGCTGCAATCATCATCACCGCAGTCATCGGACTGATCGACTACAAGGCCGCCAGCA AAATTTGGAAAGTGGACAAGTTGGACTTCGTGGCGTGCCTGTGTTCCTTTGCGGGAGTGATCCTCATCTCAGTTCCTACAGGACTTTCAGTGGCAGTAGG GGTGTCGATGTTCAAAGTGTTGCTGCACGTCACCAGACCCAATACTGTGGTGATGGGGAACATTCCTGGGACTCAGATTTATCAGAGCCTTCATAGATAC AGAGAAGCTGAGAGGGTTCCTTCCTTTCTCATCATTTCTATCGAGTCTCCCATCTACTTTGCGAATTGCACCTACCTCAAAGAAAGGATAATGAGGTGCA TAAGAGAAGAGGAGGATAGGATAAATGCGAAGAACAAGGAGGAAGGGGAGGAAGCCCCATTGAAGTACATAATATTGGACATGACAGCTGTGAGCGCCAT CGACACAAGTGGGATTGAATTTGTGTCGGAGTTAAGGAAGACGCTACAGAGCAGATCACTGAAGCTGGTGATGGCAAATCCAGGGGGAACTGTGATGGAG AAACTCCACACGTCCAAGGCACTGGAGCTTTTCGGATCAGATGGATTGTTTATCGCAGTTGGTGAAGCAATCGCTCACATTTGCTCCCTCTCCAAAACTC ACCGTGAGGTTATATGA
AA sequence Show only first row Show all	>Lus10035896 pacid=23141237 polypeptide=Lus10035896 locus=Lus10035896.g ID=Lus10035896.BGIv1.0 annot-version=v1.0 MAVIINTSGDDEVHRVCLPPQRTTAQKLKQRLGEIFFPDDPLYRFKNQTVYKKLILGLQFLVPVFEWGPHYTLDLFKSDAVSGLTIASLAIPQGISYAKL AKLPPIIGLYSSFVPPLIYSALGSSKHLAVGPVSIASLVMGSMLTQEVSPTNDPALYLKLALTSTFFAGMFQACLGVLRLGEPLVVFTAGAAVVVSLQQL KGLLGIVSFTSKMQIVPVVSSVFQNRDEWSVPTAMMGLVFLVILLSTRHISMKNPKLFWVSAAAPLTSVVAATLASFIFSSKLHGVKIIGHLPKGLNPPS LSMLLFSSSHLALAIKTGLVTGILSLTEGIAVGTTFASLGNYQVDGNKEMMAIGAMNMVGSCTSCYVTTGSFSRSAVNYNAGAKTAMSNVVMASAVLVTL LFLMPLFHYTPEVILAAIIITAVIGLIDYKAASKIWKVDKLDFVACLCSFAGVILISVPTGLSVAVGVSMFKVLLHVTRPNTVVMGNIPGTQIYQSLHRY REAERVPSFLIISIESPIYFANCTYLKERIMRCIREEEDRINAKNKEEGEEAPLKYIILDMTAVSAIDTSGIEFVSELRKTLQSRSLKLVMANPGGTVME KLHTSKALELFGSDGLFIAVGEAIAHICSLSKTHREVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	0	1
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	1.7	0.9255
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	4.7	0.8014
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	4.7	0.8978
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	5.0	0.8655
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	5.5	0.8789
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10008254 [exp]	6.3	0.8404
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	8.7	0.8730
					Lus10024122 [exp]	9.5	0.8547
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	11.7	0.8493
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	13.2	0.8577

Compare expression of checked genes

Lus10035896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.