Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 942 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 769 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 650 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G22150 607 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 600 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G08620 597 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT4G02700 592 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 526 / 3e-180 SULTR3;5 sulfate transporter 3;5 (.1) AT1G77990 485 / 2e-163 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT5G10180 478 / 9e-161 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025766 [exp] 1231 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 860 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10035896 [exp] 838 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 751 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10019389 [exp] 748 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10043247 [exp] 698 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10029616 [exp] 620 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 615 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10041111 [exp] 608 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 979 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 969 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 805 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 793 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.010G082700 [exp] 659 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 654 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 640 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 637 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092500 [exp] 629 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G167300 [exp] 620 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10035897 pacid=23141009 polypeptide=Lus10035897 locus=Lus10035897.g ID=Lus10035897.BGIv1.0 annot-version=v1.0 ATGGGTGTTAACTCACACCACCGACTAGAGCCGTCCCCTTCCCCTTCCACATGTTACCTCGAAACTAGCAAACCCGCGACCACCGCCTCCGCCGCTCCTC CTCCTCCGCCGCAACAAATGCACACCGTATGCTTGCCGCCCCACAGGACCACCCTCCAGAAACTGAAGCAGAGAGTTGGGGACATCTTCTTCCCCGACGA CCCTCTTCACCGTTTCAAGAACCAGACTGGGCGCCGGAAGTTTTTCCTCGCCCTTCAATTCCTTTTCCCTGTTTTCCAGTGGGGTTCTGAGTACTCCTTC CGCCTCCTCCGCTCCGACGCCGTTTCCGGCCTTACCATTGCCAGCCTCGCCATCCCTCAGGGAATCAGTTATGCAAAGCTTGCAACTTTGCCGCCAATTG TGGGGCTGTACTCAAGCTTCGTGCCGCCATTGATATACTCACTGCTGGGAAGCTCAAGGCATCTGGCAGTGGGTCCAGTCTCCATAGCATCGTTAGTAAT GGGGTCGATGCTAAGCGCTGAAATCTCGCCTTCTGACGACTCAACTCTCTACTTAAAGTTGGCATTCACTTCCACCTTCTTTGCTGGCCTTTTCCAGGCT TCTCTTGGCGTTCTAAGGCTGGGATTCATAATTGATTTCTTGTCGAAAGCAACACTTGTTGGGTTCACAGCGGGAGCAGCAATCATCGTCTCGCTTCAAC AGCTTAAAGGGCTTCTTGGGATTGTCCATTTCACGCCAAAGATGCAGTTCACCGCTGTTATTTCCTCTGTTCTTCACAACAAAAACGAGTGGTCATGGCA GACGATAGTGATGGGCTTCAGTTTCCTTGTGTTTCTCTTGACCGCAAGGCACATTAGCATGAAGAAACCAAAGCTTTTCTGGGTTTCTGCTGCTGCACCT TTAACATCAGTCTTCATCTCAACCATTCTAGTGTTCTGCCTTAAATCCAAGATTCATGGAGTCTCAGTAATTGGTCATCTGCCAAAGGGTTTGAATCCGC CTTCTGCCAATATGCTCTACTTTAGTGCCTCTTATCTGGGGCTTGCTATCAAAACTGGGATTGTCACTGGTGTATTGTCTCTCACTGAAGGAATAGCGGT AGGAAGGACATTCGCTGCTCTGAGGAACTACCAAGTGGATGGGAACAAAGAAATGATGGCTATTGGTCTGATGAACATAGCTGGTTCTTGTTCTTCTTGC TACGTAACAACAGGTTCATTCTCCAGGTCTGCAGTGAACTACAATGCTGGAGCACAAACAGCAGTATCCAATATTATACTGGCTGCAGCTGTGCTAGTGA CTCTACTCTTTCTGATGCCATTGTTTTACTATACACCAAATGTAATCCTGGCAGCCATCATCATAACAGCTGTGATTGGACTCATCGATTACCAGGCTGC ATTCCGCCTCTGGAAGGTTGACAAACTCGACTTCCTGGCTTGTCTATGCTCATTCTTTGGTGTTCTTTTCATTTCAGTTCCTCTAGGCCTTGCCATTGCA GTTGGAGTATCAGTGTTCAAAGTTCTGCTGCATGTTACGAGACCAAACACTGTAGTTCTGGGTAACCTACCTGGAACTCATATATACCAGAACATGAACA GATATAGAGAAGCATCAAGAGTTGCATCGTTCCTCATACTCGCTGTTGAATCCCCAATCTACTTTGCAAATTGTACATACCTCCAAGAAAGGATAATGAG ATGCATAAGGGAAGAAGAAGAGTGGATTAAAGCAAACAGTGGCAGCACGTTGAAATGCATAATTCTGGACATGACAGGCACTTATACATTTTCTGCCTTG ATTGCCATTTCGGTGACAGCGATCGACACAAGTGGGATTGAATTTGTAACTGAACTGAGGAAGACATTGGAGAAAAGATCCCTTCAGCTAGTGCTAGCAA ATCCAGTGGGAAGTGTGATGGAAAAGCTGCATCAAGCACAAGTACTGGAAACGTTTGGGTTGAATGGGATGTACCTGACAGTGGCAGATGCTGTTTCTGA TATCTCATCCCTGTGGAAATCACAGGCTTAA
AA sequence Show only first row Show all	>Lus10035897 pacid=23141009 polypeptide=Lus10035897 locus=Lus10035897.g ID=Lus10035897.BGIv1.0 annot-version=v1.0 MGVNSHHRLEPSPSPSTCYLETSKPATTASAAPPPPPQQMHTVCLPPHRTTLQKLKQRVGDIFFPDDPLHRFKNQTGRRKFFLALQFLFPVFQWGSEYSF RLLRSDAVSGLTIASLAIPQGISYAKLATLPPIVGLYSSFVPPLIYSLLGSSRHLAVGPVSIASLVMGSMLSAEISPSDDSTLYLKLAFTSTFFAGLFQA SLGVLRLGFIIDFLSKATLVGFTAGAAIIVSLQQLKGLLGIVHFTPKMQFTAVISSVLHNKNEWSWQTIVMGFSFLVFLLTARHISMKKPKLFWVSAAAP LTSVFISTILVFCLKSKIHGVSVIGHLPKGLNPPSANMLYFSASYLGLAIKTGIVTGVLSLTEGIAVGRTFAALRNYQVDGNKEMMAIGLMNIAGSCSSC YVTTGSFSRSAVNYNAGAQTAVSNIILAAAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDFLACLCSFFGVLFISVPLGLAIA VGVSVFKVLLHVTRPNTVVLGNLPGTHIYQNMNRYREASRVASFLILAVESPIYFANCTYLQERIMRCIREEEEWIKANSGSTLKCIILDMTGTYTFSAL IAISVTAIDTSGIEFVTELRKTLEKRSLQLVLANPVGSVMEKLHQAQVLETFGLNGMYLTVADAVSDISSLWKSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035897 [exp]	0	1
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025766 [exp]	1.4	0.9380
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	6.0	0.9179
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	8.9	0.9389
AT3G52480			unknown protein		Lus10004203 [exp]	11.0	0.9374
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	12.2	0.9343
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	17.7	0.9255
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	20.8	0.9061
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	23.7	0.9293
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	23.9	0.9326
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	25.4	0.9277

Compare expression of checked genes

Lus10035897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.