Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20230 95 / 4e-24 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT2G25060 90 / 2e-22 AtENODL14 early nodulin-like protein 14 (.1) AT3G17675 87 / 4e-22 Cupredoxin superfamily protein (.1) AT1G72230 87 / 4e-21 Cupredoxin superfamily protein (.1) AT3G20570 82 / 4e-19 AtENODL9 early nodulin-like protein 9 (.1) AT2G26720 82 / 4e-19 Cupredoxin superfamily protein (.1) AT5G26330 77 / 2e-17 Cupredoxin superfamily protein (.1) AT2G31050 76 / 4e-17 Cupredoxin superfamily protein (.1) AT2G32300 77 / 6e-17 UCC1 uclacyanin 1 (.1) AT5G14345 74 / 9e-17 AtENODL21 early nodulin-like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025752 [exp] 295 / 3e-102 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10006657 [exp] 127 / 2e-35 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 121 / 6e-33 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10019405 [exp] 102 / 2e-25 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2) Lus10021925 [exp] 88 / 1e-21 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 87 / 4e-21 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 86 / 9e-21 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10006680 [exp] 84 / 3e-20 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 84 / 7e-20 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192100 [exp] 186 / 1e-59 AT5G20230 100 / 2e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067300 [exp] 121 / 1e-33 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067400 [exp] 112 / 2e-31 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129400 [exp] 112 / 6e-31 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129200 [exp] 112 / 1e-30 AT2G32300 94 / 9e-23 uclacyanin 1 (.1) Potri.002G161300 [exp] 89 / 2e-22 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 90 / 3e-22 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 89 / 3e-22 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.018G129000 [exp] 89 / 5e-22 AT3G20570 76 / 7e-17 early nodulin-like protein 9 (.1) Potri.018G128900 [exp] 87 / 1e-21 AT2G25060 78 / 1e-18 early nodulin-like protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10035911 pacid=23141133 polypeptide=Lus10035911 locus=Lus10035911.g ID=Lus10035911.BGIv1.0 annot-version=v1.0 ATGGCGTTTAATTTTGGTGGTGTAGTCATAGTCATGTTCATGATCATGCGGCTTGCGGCAGCTCAAACGGTTCATCTCGTCGGAGACAGCATCGGTTGGA CTGTTCCCCCAGGTGGTGCACAGGCTTACGCCAACTGGGCCACCGGCAAGACTTTTGCCGTCGGTGACATTCTTGCTTTCAATTTCGGAACGAACGAGCA CGACGTGCTCCAGGTCCCCAAGGAATCATTCGACGCATGCACTTCCGCAAACGCCGTCGGCAACGTCATCACCACCGGCCCTGCCAACGTGACCCTTGAC GCCGCCGGCCAGCATTACTACATATGCACTATTGGCAGGCACTGTGCCGCAGGCCAGAAGCTTGCTATCACGGTGGCCTCATCTACCGGAGGAGGTAATA CTAATAACGCCACTCCACCCCCCGGCGGCAGTACTACTCCTCAGCTACCAAACTCCCCGCCGGTGGACACTTGCGCTCCCACTCCTTCAGCAGATCCAAC TGCTGTTCCTGGTCCCAACTCACCTCTGCCGCCTACTACTCCTGCTCCATCGTCGTCTCCGGCTTTAATGGCTCAAGCTTTCCCAGCCGTTATAGCTGTT GCCGCCACATTGTTGTTTGTTTCCGTTTAA
AA sequence Show only first row Show all	>Lus10035911 pacid=23141133 polypeptide=Lus10035911 locus=Lus10035911.g ID=Lus10035911.BGIv1.0 annot-version=v1.0 MAFNFGGVVIVMFMIMRLAAAQTVHLVGDSIGWTVPPGGAQAYANWATGKTFAVGDILAFNFGTNEHDVLQVPKESFDACTSANAVGNVITTGPANVTLD AAGQHYYICTIGRHCAAGQKLAITVASSTGGGNTNNATPPPGGSTTPQLPNSPPVDTCAPTPSADPTAVPGPNSPLPPTTPAPSSSPALMAQAFPAVIAV AATLLFVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10035911 [exp]	0	1
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	1.7	0.7904
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	10.1	0.7831
AT1G18010			Major facilitator superfamily ...		Lus10019527 [exp]	14.4	0.6535
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	17.4	0.7372
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	25.9	0.7308
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	27.0	0.7360
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	27.3	0.7235
					Lus10041663 [exp]	28.0	0.7361
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	28.9	0.7201
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	32.2	0.6937

Compare expression of checked genes

Lus10035911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.