Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38050 735 / 0 Xanthine/uracil permease family protein (.1) AT2G27810 544 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT2G05760 307 / 5e-96 Xanthine/uracil permease family protein (.1) AT1G60030 300 / 5e-93 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT2G34190 299 / 8e-93 Xanthine/uracil permease family protein (.1) AT5G49990 280 / 2e-85 Xanthine/uracil permease family protein (.1) AT5G62890 278 / 1e-84 Xanthine/uracil permease family protein (.1.2.3.4) AT1G10540 265 / 6e-80 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT2G26510 256 / 4e-76 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G49960 249 / 6e-74 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025716 [exp] 1276 / 0 AT4G38050 824 / 0.0 Xanthine/uracil permease family protein (.1) Lus10009401 [exp] 526 / 3e-180 AT2G27810 888 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10020551 [exp] 519 / 4e-176 AT2G27810 891 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10030014 [exp] 290 / 3e-89 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 281 / 5e-86 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 280 / 2e-85 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 279 / 5e-85 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 279 / 5e-85 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 269 / 8e-81 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011400 [exp] 843 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.009G148600 [exp] 577 / 0 AT2G27810 900 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.004G187900 [exp] 567 / 0 AT2G27810 880 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.014G157800 [exp] 299 / 9e-93 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 288 / 1e-88 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 286 / 6e-88 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 286 / 9e-88 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.004G058800 [exp] 285 / 3e-87 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.010G095500 [exp] 282 / 4e-86 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.008G146400 [exp] 281 / 7e-86 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10035946 pacid=23141060 polypeptide=Lus10035946 locus=Lus10035946.g ID=Lus10035946.BGIv1.0 annot-version=v1.0 ATGGAGACTGGGTCGACCTCCGATTCCCGTGCTAAGCCTGATAAGGGAAGAACAAGCAGCAGAGGCAGCAAGGCTAAGAAGCTATTCGGCTCCATGATGT CCAATATCGAGCCTTACATCCCTAACTCCGACCACAATCCAAATCACTTGAGATCTTGGGCTAAGAAAACCGGCTTTGTATCTACTACTTTCTCCACTGA ATCCACTTCAGCAAGTAACAGCACCACTGATTTTGACCCCGGGAGGAGACCCCCAGCTACTGCTACTAACCCCCGCGGGTCCACTTCTCAAACCGACCCA ATTCTGGGCAGGACCCGAGGGGCTGAAATTCAACGGGATGAGAGGACTCCTATTGGCGGGCTTAGAGGTGAGAATAAGAAGAGGAGAGTTGGGAATGAGT TTGTTTTGGGTGGTAAAGAAGAGGAAGGAAGCAATGTTGGAGATCGAAATGCCACTCGCATCAATGCTTCCCGTGATGGAGTCTCTATAGCCATTCCTGT GGAGCAGAAGAAAGATGAAGAAGAATCTATCGGAAGGGAGTTGGGAACGGACATGTATCCTGGAGGCGGTGGCGAGGGTGGAGGATTTCAGAGGCACGAT GGTGTTCGAATTGGCTTCAGAGATAACCCTGGCCTTGTTCAACTTTTGTATTATAGCTTGCAGCACTATCTGTCTTTGGCTGGTTCATTGATCTTCATTC CAATGATCATTGTACCAACTATGGGTGGCACGGATAAAGATACCGCTACTGTGATTTCCACAATGCTTATGGTTTCTGGAGTTACTACGATTCTACATTC CTATTTTGCTACCCGGCTTCCATTAGTTCAAGGGAGCTCATTTGTCTATTTGGCACCAGCACTAGTCATCATGAACGCTCAGGAATACCGGAATCTCACA GAAAATAAATTCAGACACATTATGAGGGAACTTCAAGGGGCAATTATTGTTGGTTCAGTATTCCAGAGCCTCTTGGGATTCTCTGGCCTAATGTCTCTTC TTTTGAGATTAATCAATCCAGTGGTAGTGGCTCCAACAGTAGCTGCAGTTGGTTTAGCATTTTTTAGCTATGGTTTCCCACAAGCTGGAAGTTGTGTGGA AATCAGCATCCCTCTTATTGTGTTAGTTCTAATATTCACCTTGTATCTACGCGGGATATCTATCTTTGGACACCGATTATTCAGAATTTATGCTGTTCCA GTCAGCGTGATAATTATATGGATATATGCGTTCTTTTTGACAGCTGGAGGAGCTTACAATTTCAAGGGTTGCGACACTGGTATTCCCAGTTCAAATATCC TTGTGGATGCATGCAGGAAACATGCATATACAATGCAGCACTGCAGGACTGATGTTTCCAGTGCGTGGAGGACTGCTGCATGGGTCAGGATTCCCTACCC ATTTCAGTGGGGTGCTCCAATCTTCAATATAAGGACTTCCTTGATCATGATAGTTGTATCATTGGTGGCGTCGGTTGATTCGGTTGGAATATACCACTCC ACATCCTTACTGGTTAGTTCAAAGCCTCCAACTCCGGGAATTGTCAGCAGAGGAATTGCATTGGAGGGTCTATGCAGTATATTGGCGGGGCTTTGGGGTT GCGGTACCGGTTCGACAACCTTAACTGAAAACATCCACACTATCAACGTCACAAAGGTTGCCAATCGAGGAACAGTGGTGCTTGGTGCAGTTTTCCTGAT CTTATTCTCTCTTTTTGGAAAAGTGGGAGCCATTCTTGCTTCTATACCACTGGCCTTGGCTCCTGCCATACTGTGCTTTATTTGGGGGCTTATTGCTGCG TTAGGTCTCTCAACTCTGCAGTACACTCAAACTGCAAGTTTCAGAAACATAGCAATTGTAGGAGTTTCATTGTTCCTAGGAATGTCGGTTCCTGCTTATT TCCAGCAGTACGAGCCAAAATCCAGCCTGATACTGCCGAGCTACTTAATTCCGTATGCAGCAGCTTCAGATGGACCAGTCAACACTGGCAGTAAGCAACT CGATTTTGCAATGAATGCACTCATGTCCATGAACATGGTGGTGACATTATTGATTGCATTTGTACTTGACAACACTGTCCCCGGTAGCCGGCAGGAAAGA GGGGTATATATCTGGTCTAGCCCACAGGACTTGGCTGATGATCCATCTCTGCACGAAGATTACTCGCTGCCCAATAAAGTTGACCGCTTCTTCTGTTGGG CAAGATGCCTTCGTGCATGA
AA sequence Show only first row Show all	>Lus10035946 pacid=23141060 polypeptide=Lus10035946 locus=Lus10035946.g ID=Lus10035946.BGIv1.0 annot-version=v1.0 METGSTSDSRAKPDKGRTSSRGSKAKKLFGSMMSNIEPYIPNSDHNPNHLRSWAKKTGFVSTTFSTESTSASNSTTDFDPGRRPPATATNPRGSTSQTDP ILGRTRGAEIQRDERTPIGGLRGENKKRRVGNEFVLGGKEEEGSNVGDRNATRINASRDGVSIAIPVEQKKDEEESIGRELGTDMYPGGGGEGGGFQRHD GVRIGFRDNPGLVQLLYYSLQHYLSLAGSLIFIPMIIVPTMGGTDKDTATVISTMLMVSGVTTILHSYFATRLPLVQGSSFVYLAPALVIMNAQEYRNLT ENKFRHIMRELQGAIIVGSVFQSLLGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCVEISIPLIVLVLIFTLYLRGISIFGHRLFRIYAVP VSVIIIWIYAFFLTAGGAYNFKGCDTGIPSSNILVDACRKHAYTMQHCRTDVSSAWRTAAWVRIPYPFQWGAPIFNIRTSLIMIVVSLVASVDSVGIYHS TSLLVSSKPPTPGIVSRGIALEGLCSILAGLWGCGTGSTTLTENIHTINVTKVANRGTVVLGAVFLILFSLFGKVGAILASIPLALAPAILCFIWGLIAA LGLSTLQYTQTASFRNIAIVGVSLFLGMSVPAYFQQYEPKSSLILPSYLIPYAAASDGPVNTGSKQLDFAMNALMSMNMVVTLLIAFVLDNTVPGSRQER GVYIWSSPQDLADDPSLHEDYSLPNKVDRFFCWARCLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	4.0	0.8094
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	7.3	0.8375
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	8.5	0.8247
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	11.6	0.8321
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	12.9	0.8339
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	13.1	0.7755
AT3G01810			unknown protein		Lus10037001 [exp]	14.0	0.8233
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	14.3	0.8287
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	18.2	0.8277
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	26.8	0.7828

Compare expression of checked genes

Lus10035946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.