Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 1471 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 1413 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 721 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT2G25140 677 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 672 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 604 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 407 / 4e-131 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 302 / 9e-95 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 69 / 1e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 62 / 1e-09 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016723 [exp] 1715 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 1273 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 795 / 0 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032514 [exp] 730 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043013 [exp] 729 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10041018 [exp] 645 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10030705 [exp] 636 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 607 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10021159 [exp] 592 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 1527 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 1518 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 736 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 718 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 669 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 660 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 639 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 614 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 612 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 435 / 4e-143 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10036017 pacid=23140973 polypeptide=Lus10036017 locus=Lus10036017.g ID=Lus10036017.BGIv1.0 annot-version=v1.0 ATGGCGAGGTTACTATCTCATTCCATCAATACTACTTATCTGGCTCTTCCAAAGGGAATCCAATCTCAGAGATGTGATAATTCAAAGACTTCTTCTGTCA AGACGATGGCTTGTTTACAGGCACCTGTTTATACATTGAGAGGTTTCTCCGGACTACGGAGTTCCAACAGTTTAAATACAATGATGCAACCGGTACAAGA TTTTCGATCCAGAGTTTCTGTGACTGTGTCACCTAAGCAAAGGAGAGGTAAAAGATTTGTTGCTAGAGCCATGTTTGAACGGTTCACAGAAAAAGCTATC AAAGTTATCATGCTTGCCCAAGAGGAGGCAAGACGGCTTGGTCACAACTTCGTTGGTACAGAGCAAATCTTGTTGGGTCTTATTGGTGAGGGCACTGGCA TTGCTGCTAAGGTCCTCAAATCTATGGGAATCAATCTTAAAGATGCTCGCGTAGAAGTGGAAAAAATTATTGGAAGAGGCAGTGGATTTGTTGCTGTTGA AATTCCGTTTACTCCCCGTGCCAAGCGGGTTCTAGAACTGTCACTTGAAGAAGCCCGCCAACTTGGGCATAACTACATTGGATCCGAGCACTTGCTCCTT GGCCTGTTACGTGAAGGTGAGGGTGTTGCAGCTCGTGTTCTTGAGAATTTAGGTGTTATTCGCATGGTTGGTGAGAGCAATGAAGTTACTGCTAATATTG GACCGAACACTAGGGATACAAAGATGCCAACTCTTGAAGAGTATGGAACTAATTTGACCAAGCTTGCTGAGGAGGGTAAATTAGATCCTGTTGTTGGAAG GCAGCCACAGATAGAGCGTGTTGTCCAAATCCTGGGTCGAAGGACTAAGAATAATCCTTGTCTTATTGGAGAGCCAGGCGTTGGTAAAACAGCAATTGCT GAGGGTCTTGCTCAACGAATAGCAAGTGGTGATGTCCCTGAAACTATTGAAGGGAAGAAGGTTATTACTTTGGATATGGGTCTTCTTGTTGCTGGAACAA AATACCGTGGTGAGTTTGAGGAAAGGCTCAAGAAGCTGATGGAGGAAATCAGGCAAAGTGATGAAATCATTCTCTTCATTGATGAGGTGCATACGTTAAT TGGCGCGGGGGCTGCAGAAGGGGCTATTGATGCTGCTAATATCTTGAAACCTGCTCTTGCAAGGGGTGAATTGCAGTGCATTGGAGCTACAACCTTGGAC GAATACAGAAAGCATATTGAGAAGGACCCTGCACTGGAAAGACGATTCCAGCCTGTGAAAGTACCTGAGCCTACTGTTGACGAAAGTATTCAAATTTTGA AAGGGCTGCGTGAGCGATATGAGATCCACCATAAGCTTCGCTACACAGATGAGGCCCTAGCAGCTGCTGCCCACCTATCACACCAGTACATCAGTGATCG GTTCTTGCCTGATAAGGCAATTGATTTGATTGATGAGGCTGGATCTCGGGTTCGTCTTCGCCATGCACAGGTCCCCGAGGAAGCCAAGGAGCTTGAGAAA GAGGTCAGGCAGATTATAAAAGAGAAGGATGAAGCTGTTCGCAATCAAGATTTTGAGAAGGCTGGAGAGCTCCGTGATAGAGAAATGGACCTCAAGGCAC AGATCACAGCTATTGTGGAGAAAGGCAAGGAGATGAGCAAAGCTGAAACAGAGGCTGGGGAAGAAGGTCCGACTGTGACTGAAGCAGACATTCAGCACAT TGTGTCTTCATGGACTGGAATTCCTGTTGACAAGGTGTCAAGTGATGAATCTGACCGTCTTCTGAAGATGGAAGAAACCTTACACAAGCGAGTCATTGGT CAGGATGAAGCTGTTGAAGCCATTAGCCGTGCTATACGCAGGGCCCGTGTTGGACTCAAGAACCCCAATCGGCCTATTGCTAGCTTCATCTTTTCTGGTC CAACTGGTGTTGGCAAATCGGAACTGGCAAAATCACTTGCTGCCTACTATTTTGGCTCTGAAGAAGCAATGGTTAGACTTGACATGAGTGAGTTCATGGA AAGACACACAGTGTCTAAGCTCATAGGTTCACCTCCTGGGTATGTTGGTTACACAGAAGGTGGTCAGTTGACCGAAGCTGTTAGGCGTCGTCCTTATACT CTTGTGCTCTTTGATGAGATAGAGAAAGCTCACCCTGATGTTTTCAACATGATGCTTCAAATCCTGGAGGATGGAAGATTAACTGACAGCAAGGGTAGAA CGGTAGACTTCAAAAACACGCTCTTGATCATGACTTCAAATGTGGGAAGCAATGTCATTGAGAAGGGAGGGAAACGTATAGGGTTTGACCTCGACTATGA CGACAAGGACACGAGTTATAACAGGATTAAGAGTCTTGTTTCAGAGGAACTGAAACAGTATTTCAGGCCTGAGTTCTTGAACAGATTGGATGAGATGATT GTGTTCAGACAGCTGACTAAGCTGGAGGTGAAGGAAATTGCAGATATAATGTTGATGGAGGTGTTTAATCGGCTCAAGGGGAAAGAGATTGAACTTCAAG TGACAGAGAGGTTCAGAGAACGAGTTGTGGACGAAGGTTACAACCCGAGCTATGGGGCGAGGCCTCTGAGAAGAGCAATAATGAGACTCCTGGAGGATAG CATGGCTGAGAAAATGCTTGCAGGGGAGATCAAAGAGGGGGACTCTGTGATCATGGATGTAGACTCTGATGGCAAAGTCATCGTTCTAAATGGAAGCAGC AGTGGGACCCCTGATGCCCTACCAGATATGTTATCTATTGCATAA
AA sequence Show only first row Show all	>Lus10036017 pacid=23140973 polypeptide=Lus10036017 locus=Lus10036017.g ID=Lus10036017.BGIv1.0 annot-version=v1.0 MARLLSHSINTTYLALPKGIQSQRCDNSKTSSVKTMACLQAPVYTLRGFSGLRSSNSLNTMMQPVQDFRSRVSVTVSPKQRRGKRFVARAMFERFTEKAI KVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL GLLREGEGVAARVLENLGVIRMVGESNEVTANIGPNTRDTKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIA EGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD EYRKHIEKDPALERRFQPVKVPEPTVDESIQILKGLRERYEIHHKLRYTDEALAAAAHLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAKELEK EVRQIIKEKDEAVRNQDFEKAGELRDREMDLKAQITAIVEKGKEMSKAETEAGEEGPTVTEADIQHIVSSWTGIPVDKVSSDESDRLLKMEETLHKRVIG QDEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLAAYYFGSEEAMVRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYT LVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSNVIEKGGKRIGFDLDYDDKDTSYNRIKSLVSEELKQYFRPEFLNRLDEMI VFRQLTKLEVKEIADIMLMEVFNRLKGKEIELQVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIMDVDSDGKVIVLNGSS SGTPDALPDMLSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	1.4	0.8563
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	2.6	0.8808
AT2G40430			unknown protein		Lus10037530 [exp]	8.7	0.8177
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	11.6	0.8130
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	13.0	0.7994
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	13.7	0.7938
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	14.7	0.8037
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	15.8	0.7652
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	16.9	0.8050
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	18.4	0.7382

Compare expression of checked genes

Lus10036017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.