Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 217 / 1e-70 AtENODL18 early nodulin-like protein 18 (.1) AT2G15770 43 / 0.0001 Cupredoxin superfamily protein (.1) AT5G26330 42 / 0.0002 Cupredoxin superfamily protein (.1) AT3G17675 38 / 0.0008 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009231 [exp] 107 / 5e-27 AT1G08500 117 / 4e-31 early nodulin-like protein 18 (.1) Lus10037998 [exp] 97 / 3e-24 AT1G08500 101 / 1e-26 early nodulin-like protein 18 (.1) Lus10006657 [exp] 45 / 2e-05 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10007026 [exp] 44 / 2e-05 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10006680 [exp] 44 / 3e-05 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10012165 [exp] 43 / 6e-05 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10007582 [exp] 44 / 9e-05 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012085 [exp] 42 / 0.0002 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10038098 [exp] 42 / 0.0003 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067300 [exp] 228 / 3e-75 AT1G08500 207 / 2e-67 early nodulin-like protein 18 (.1) Potri.001G273000 [exp] 227 / 2e-74 AT1G08500 213 / 1e-69 early nodulin-like protein 18 (.1) Potri.014G072700 [exp] 106 / 1e-27 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.002G150600 [exp] 105 / 2e-27 AT1G08500 97 / 2e-24 early nodulin-like protein 18 (.1) Potri.006G259101 [exp] 55 / 3e-09 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 52 / 4e-08 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 52 / 6e-08 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 50 / 2e-07 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.001G187700 [exp] 48 / 1e-06 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.002G156401 [exp] 47 / 3e-06 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10036067 pacid=23141254 polypeptide=Lus10036067 locus=Lus10036067.g ID=Lus10036067.BGIv1.0 annot-version=v1.0 ATGGGACGGAGCAGGGAATTGGGTATGATGAGCAGATCATCACCATCATCAGCAGCTGCTCTTCTTGTTCAGTGCTATGTTATGATGACGACGACGATGA TGATTTCGCCGTGGGTTGTTCGAGGAGGTGCGGTTGCTTACAAGAACTACACGGTGGGGGATTCACTGGGATGGTATGATATCTCAGAGAAACCAACTGC TGATTACCAGAAATGGGCCGATTTCCACCACAACTTCTCCTTGGGTGATTTCCTCATTTTCAACACCAACACCAATCATTCAGTGATCCAGACCTACAAC CTCACCACCTACCAACAATGCAACTACGACGACTCCCAACAAGTCGACACCACCCAGTGGTCCTCCGCCGACCCTTCCAACACCGCCACCAACCCTGTCA CCGTCGCCGTCCCCCTCCTCAAGGAAGGCCCTAATTTTTTCTTCTCCAGTGACTACGACGGGGACCAGTGCCGCGGTGGCCAACGATTCAAGATTGCCGT CGCCCACGGCAAGGGCCTCCCCGACAGCCTAAAGCCGGCTTCAGAGCAAGCCCCTGCACCCAACAGCGAAGACGTCAACAACGAGGATTCGGCTCCGGAC ACCACCGTTCCGGCCGACTTCACCCACCCTAAGGGACAGAAACCCACTGCCGCTACTGATTCCGATGACCCCGATTCGGATAGCGACGATGATAAGAAGG CCACGTCGTCGCCGTCAAAGAACTCCGGGAACCGCCTTATCCTTTCCGGGTCCAGATGGATGGTTTTAATATTGGGAATTTGTTATTACTACATGTTGTG A
AA sequence Show only first row Show all	>Lus10036067 pacid=23141254 polypeptide=Lus10036067 locus=Lus10036067.g ID=Lus10036067.BGIv1.0 annot-version=v1.0 MGRSRELGMMSRSSPSSAAALLVQCYVMMTTTMMISPWVVRGGAVAYKNYTVGDSLGWYDISEKPTADYQKWADFHHNFSLGDFLIFNTNTNHSVIQTYN LTTYQQCNYDDSQQVDTTQWSSADPSNTATNPVTVAVPLLKEGPNFFFSSDYDGDQCRGGQRFKIAVAHGKGLPDSLKPASEQAPAPNSEDVNNEDSAPD TTVPADFTHPKGQKPTAATDSDDPDSDSDDDKKATSSPSKNSGNRLILSGSRWMVLILGICYYYML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	3.0	0.9039
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	4.5	0.8959
AT5G43150			unknown protein		Lus10004910 [exp]	4.5	0.8961
AT2G25625			unknown protein		Lus10013129 [exp]	4.5	0.9021
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	4.9	0.8943
AT3G09050			unknown protein		Lus10027783 [exp]	5.7	0.8996
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	6.2	0.8765
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	7.9	0.8847
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	8.5	0.8886
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	9.2	0.8762

Compare expression of checked genes

Lus10036067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.