Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 492 / 7e-170 LAC14 laccase 14 (.1) AT5G48100 472 / 3e-162 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT2G30210 446 / 7e-152 LAC3 laccase 3 (.1) AT5G60020 442 / 5e-150 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 439 / 3e-149 LAC11 laccase 11 (.1) AT5G58910 436 / 2e-148 LAC16 laccase 16 (.1) AT5G01190 434 / 4e-147 LAC10 laccase 10 (.1) AT5G07130 432 / 1e-146 LAC13 laccase 13 (.1) AT2G29130 429 / 3e-145 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 427 / 1e-144 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026812 [exp] 995 / 0 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10041067 [exp] 489 / 1e-168 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10019122 [exp] 455 / 2e-155 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 453 / 2e-154 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10026512 [exp] 450 / 2e-153 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10041066 [exp] 446 / 1e-151 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10023189 [exp] 445 / 1e-151 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 444 / 3e-151 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10034614 [exp] 441 / 1e-149 AT5G60020 934 / 0.0 laccase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G088600 [exp] 625 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 621 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 620 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 616 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 607 / 0 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.005G200600 [exp] 499 / 1e-172 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 497 / 1e-171 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.005G200500 [exp] 495 / 3e-171 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 494 / 6e-171 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 494 / 7e-171 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10036070 pacid=23141003 polypeptide=Lus10036070 locus=Lus10036070.g ID=Lus10036070.BGIv1.0 annot-version=v1.0 ATGCTGAGCGTGAACGGATCATTCCCAGGTCCAGCAATCAAAGTTCGTAGAGGAGATACTGCTTTGTCAATGTCCACAATCATGGCACCTATGGTCTCAC TATTCACTGTGAAGCAATCTCAAAACCCGTGGTCCGACGGTCCTGAAAATATAACACAATGCCTAATTGAAGTTGGTAAGAACTTCACATATGAGGTTAT ATTCTCCGACGAGGAAGGAACTCTGTGGTGGCATGCACACAACGAATGGACTCAAGCCACCGTCCATGGCGCCATTATTGTCTTGCCTCCCCTTGGAGCT AATTACCCTTTTCCAACTCCTCGTGCCGATCAGACCCTTGTCATTGCATCATGGTTCAAGGGAGACGTGAAATCAATCATCGACGAAGCCCTCACCACGG GAGGCGACCCACGAGCATCGGACGCCTTCACAATAAACGGCGAGCCTGGAGAGCTCTACCAGTGCTCAAAGCAAACAACCTTCCGAATGACAGTCGACCC AGGCAAAACCTACCTCCTCCGCCTCATAAACGCCGTGATGAACGAGGAACACTTCTTCGGCATCGCCAACCACACCCTCACTGTAGTCGGCCGCGACGGA GCCTACACAAAACCCTTCCCGACGCCCTACGTCATGATATCTCCCGGCCAAACAATGGACGTCCTACTCACCACCGCCAACCAGACCCAGCTGGCACAGT CACAGAACTACCACTACTACATGGTGTCCACGCCTTTCGAAGACGGCGACGTGCCGTTCGACAAGACAACGGCCACGGCCGTGATGCAGTACTCTGGGAT CTATCCTCCGCCGTCCACGGTGCCGTTTCCGGTGATGCCGGCTTACGACGATAGCGTTGCGGCGGAAGGGTTTGCGGGGAAGTTGAGGAGCCTGGGGAGC GAAGAGCACCCGGTTAAGGTTCCTAAGGATGTTGGGATCAAGAGGTTGACGATAGCGATAGCGTTGAATGAGTTGGATTGTGTTAACGCATCCTGTGATG GTCCTGACGGGAATAGGCTTGCCGCTAGTATGAATAATGTCAGTTTCGTCAGTCAAAGCGTTGACATCCTTGATGCCTACTACAGCAACCAAAAGGGGAT ATACAATGAGGATTTCCCAAGTGAGCCCTTGAACAAATTCAACTTCACAGGGGACGCAGACGTATCAGGGAAGACGAGCAGAGGAACAAAGACAATAATG TTGGAGTACGGAGACAAGGTGGAGATAGTGCTGCAAGGAACCAGCCTTAGTGCTGCTCAGAACCATCCGATCCACATCCATGGCTACAACGTCTACTTGG TCGGTGTCGGTAAGGGGAACTTCGACGTCAACACTCACCCAGCAAATTCCTACAACTTGGTCGATCCTCCTTATGTCAACACCATCGGTGTCCCGAAAAA CGGCTGGGCAGCATTCAGATTCGTTGCGGATAATCCAGGGGTGTGGTTTATGCACTGTCACCTGGAGCGACATGCAACCTGGGGGATGGAAACTGTTGTC ATAGTGAAGAATGGGAATTCCACGGATGAACAAATTCGCCCTCGCCCTCATCATATGCCTCTCTGCTCATCTTCTTAA
AA sequence Show only first row Show all	>Lus10036070 pacid=23141003 polypeptide=Lus10036070 locus=Lus10036070.g ID=Lus10036070.BGIv1.0 annot-version=v1.0 MLSVNGSFPGPAIKVRRGDTALSMSTIMAPMVSLFTVKQSQNPWSDGPENITQCLIEVGKNFTYEVIFSDEEGTLWWHAHNEWTQATVHGAIIVLPPLGA NYPFPTPRADQTLVIASWFKGDVKSIIDEALTTGGDPRASDAFTINGEPGELYQCSKQTTFRMTVDPGKTYLLRLINAVMNEEHFFGIANHTLTVVGRDG AYTKPFPTPYVMISPGQTMDVLLTTANQTQLAQSQNYHYYMVSTPFEDGDVPFDKTTATAVMQYSGIYPPPSTVPFPVMPAYDDSVAAEGFAGKLRSLGS EEHPVKVPKDVGIKRLTIAIALNELDCVNASCDGPDGNRLAASMNNVSFVSQSVDILDAYYSNQKGIYNEDFPSEPLNKFNFTGDADVSGKTSRGTKTIM LEYGDKVEIVLQGTSLSAAQNHPIHIHGYNVYLVGVGKGNFDVNTHPANSYNLVDPPYVNTIGVPKNGWAAFRFVADNPGVWFMHCHLERHATWGMETVV IVKNGNSTDEQIRPRPHHMPLCSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	1.7	1.0000
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	2.4	1.0000
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	3.0	1.0000
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	3.2	0.9956
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	3.5	1.0000
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	4.2	0.9846
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	4.5	0.9491
					Lus10014629 [exp]	4.6	0.9709
					Lus10032804 [exp]	5.7	0.9674
AT4G02210			unknown protein		Lus10032996 [exp]	5.7	0.9144

Compare expression of checked genes

Lus10036070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.