Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19500 578 / 0 Tryptophan/tyrosine permease (.1) AT2G33260 120 / 1e-29 Tryptophan/tyrosine permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041401 [exp] 176 / 3e-49 AT5G19500 175 / 1e-48 Tryptophan/tyrosine permease (.1) Lus10036527 [exp] 172 / 2e-48 AT5G19500 173 / 3e-48 Tryptophan/tyrosine permease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224950 [exp] 638 / 0 AT5G19500 606 / 0.0 Tryptophan/tyrosine permease (.1) Potri.010G221900 [exp] 187 / 7e-54 AT5G19500 141 / 2e-36 Tryptophan/tyrosine permease (.1) Potri.019G031800 [exp] 130 / 7e-33 AT2G33260 567 / 0.0 Tryptophan/tyrosine permease (.1) Potri.008G040400 [exp] 64 / 1e-12 AT5G19500 58 / 2e-11 Tryptophan/tyrosine permease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF03222 [flax] [poplar] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Lus10036099 pacid=23141058 polypeptide=Lus10036099 locus=Lus10036099.g ID=Lus10036099.BGIv1.0 annot-version=v1.0 ATGAAGCACAAACCTTTATACGCCCATCACCACTGCAAATCCTTAACAAGCCGACTCTGTCATCATCAGCTCACAAGACCCAGACCTAGTACTACTAGTT TCAGTTGCAGGTCTCAAGATCAGCAGCAACAATATGGAGCTGAGAGGCTCTTCTCCAATCTTAACCAAGCCACTTTCAAGAGAGAACCTGGAAGCTTGCC CAGTGCCATTTCTCTTGTGGCCGGTACTACCGTGGGTGCTGGGATTCTCGCCATTCCTGCTGTTACTCAAGAATCTGGATTCCTGGCCTCTGCATTTGCC TGCATTATATGTTGGATGTTCATGGTAGCCACTGGTTTGCTGATTGCGGAAGTAAATGTGAAGACAATGTGTGAATTGGGCTCTGGTGGAGTATCACTGG TATCAATGGCGAAGCGTACCCTTGGATCAGCGGGAGTTCAAGTTGCTTGCTGGTCATACATATTCATCCACTATGCCCTTCTTGTTGCTTATGTGGCTCG TTCCTCTGATATCATAACAAATAACCTAGGCATTCCATTATGGGAGAGTGCTGCTTTATTCTCTTTGGTTTTGGGAAGCATATGTTACTTTGGAAGCCAA AGAGTTATTGGTGCTGTTAATGGAGTTCTTGTGTTGGGGATTATCATTTCTTTCACAGGGCTTGTGGTTGTAGCAAGCGGAAACCTGCAATGGGATGCTC TTCTCAAAGCAAATTTTGAAGCTGTTCCTATGAGCATACCAATAATTGCACTTTCGTTTGTATATCAGAATGTGGTACCTGTTCTTTGCACAAATCTTGA AGGAAATCTGACAAAAGTAAGGGCTGCAATTGTTCTGGGCACTGCAATTCCTCTTGCCTTGTTTCTTGTTTGGGATGCGGTAATTCTAGGATCCATTGCT GGGATTGACACTGCAAATGCAGTTATTGATCCACTGCAGCAGTTGCGTTCAACAAATGGAAGTGTTGGGCCCATAGTTGAGCTCTTTTCCCTTCTTGCCA TTGCGACATCTTATATTGGCTTCGTTCTTGGCCTTGCAGACTTCCTTTCTGACTTGTTAGAACTTCCGGCTGGTCAGAACAGCTATCTACCATACCTCTT GACTTTGTTTCCGCCGCTGGTACTAGCATTGCTCGATCCTGAGATATTTTTCAAGGCTTTGGACTTTGCAGGCACATATGGAGTCCTGGTATTATTTGGA ATTCTTCCTGCTGCCATGGCGTGGTCCGATCGCTACTCTAGTACATCGTCATCGATGAAATTGCAGCGGCAGGAACTGGTTCCAGGAGGAAAAGTCACTC TCTCCCTTCTCATTGGAGGTGCAGGATCCGTCATTCTTTCTGAAGTAGTCGACAAAATCGGGCATCCACTGTAA
AA sequence Show only first row Show all	>Lus10036099 pacid=23141058 polypeptide=Lus10036099 locus=Lus10036099.g ID=Lus10036099.BGIv1.0 annot-version=v1.0 MKHKPLYAHHHCKSLTSRLCHHQLTRPRPSTTSFSCRSQDQQQQYGAERLFSNLNQATFKREPGSLPSAISLVAGTTVGAGILAIPAVTQESGFLASAFA CIICWMFMVATGLLIAEVNVKTMCELGSGGVSLVSMAKRTLGSAGVQVACWSYIFIHYALLVAYVARSSDIITNNLGIPLWESAALFSLVLGSICYFGSQ RVIGAVNGVLVLGIIISFTGLVVVASGNLQWDALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLTKVRAAIVLGTAIPLALFLVWDAVILGSIA GIDTANAVIDPLQQLRSTNGSVGPIVELFSLLAIATSYIGFVLGLADFLSDLLELPAGQNSYLPYLLTLFPPLVLALLDPEIFFKALDFAGTYGVLVLFG ILPAAMAWSDRYSSTSSSMKLQRQELVPGGKVTLSLLIGGAGSVILSEVVDKIGHPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	0	1
AT1G54680			unknown protein		Lus10033821 [exp]	1.4	0.9560
AT2G38570			unknown protein		Lus10022733 [exp]	2.0	0.9115
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	2.4	0.9323
AT1G54680			unknown protein		Lus10018965 [exp]	4.2	0.9290
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	5.7	0.8663
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	6.6	0.8579
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	7.3	0.8997
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	7.4	0.8824
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	7.5	0.8863
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	11.4	0.9044

Compare expression of checked genes

Lus10036099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.