Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11440 295 / 7e-94 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 273 / 1e-86 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 234 / 6e-72 MYB ATMYB81 myb domain protein 81 (.1) AT2G32460 223 / 4e-67 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT5G55020 216 / 3e-64 MYB ATMYB120 myb domain protein 120 (.1) AT4G26930 212 / 5e-64 MYB ATMYB97 myb domain protein 97 (.1) AT4G21440 164 / 2e-46 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G10280 163 / 6e-46 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G01530 156 / 7e-45 MYB ATMYB57 myb domain protein 57 (.1) AT4G05100 159 / 2e-44 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026787 [exp] 874 / 0 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10008685 [exp] 313 / 2e-99 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 310 / 1e-94 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10040063 [exp] 219 / 1e-65 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027189 [exp] 218 / 1e-64 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 216 / 3e-63 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 211 / 8e-62 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10040139 [exp] 157 / 3e-45 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10030378 [exp] 159 / 1e-44 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018700 [exp] 474 / 3e-164 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 471 / 1e-162 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.003G189700 [exp] 399 / 4e-134 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 372 / 8e-124 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 222 / 1e-66 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.013G130900 [exp] 198 / 3e-56 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.001G346600 [exp] 157 / 1e-45 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.004G033100 [exp] 162 / 3e-45 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 161 / 5e-45 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 159 / 2e-44 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036103 pacid=23141078 polypeptide=Lus10036103 locus=Lus10036103.g ID=Lus10036103.BGIv1.0 annot-version=v1.0 ATGCCGAATGGGAGCGAGGAGAAGAAAAGGTCTAAGGGACGTCGAGACTCGACGGCGGGGATTGAACAAGGTAGTAGTGCCCTAAAGAAGGGACCGTGGA CTTCTGGAGAAGATGCGATTCTGGTGGAGTATGTTACCAAGCATGGAGAAGGCAATTGGAATGCTGTCCAGAAACACTCTGGGTTGTCGAGATGTGGGAA AAGCTGCAGGCTCCGATGGGCAAATCATCTTAGACCAGACTTGAGGAAAGGTGCTTTCACTCCTGACGAAGAGCGCCTTATTATTGAACTGCATGCTAAA ATGGGCAACAAGTGGGCGAGAATGGCAGCTGAGATGCCCGGACGCACAGATAATGAAATTAAGAACTACTGGAACACGAGAATCAAAAGACTGCAACGTG CTGGACTGCCAATTTATCCTCCTGAGGTCTGCTCGAAAATACGTGATGGAAGTCAAGAAAGCATGGGCACAGACAGTAATGCAGACGGTCTTCCTGATCC AGCACAAAATCATCACAGAGAGATCCCAGAACTGAATTTCAAAAACTTGAAAATTAACCGCGGAGTTCTTTCTTATTTGCCAAATCTTCTTGATGTTCCT GCAAGCAGCTTCCTAAAGCAAGGTCTGGGTTCAAGCAATGATTATGGTTTCATGCTCCCAACACTACCGCCTCCTCCAAAGCGGCTCAGAGCAGACAGCA TTCTCCCTGGTGTAGATGGTAGTGCTGTCAGTAGTGGCTTCCCACCTTACTGTCAATTCCCAGACTATGCTTGTGAGAGCATCCCTGAGCATTTTGGCTG CTTAACTTCTCCATATGATTCTGATGTCAATACCTATGATGATCAGCCACCAATGGCTGTTCTTCCAGGCAGTCATGCCTTACTAAATGACGATTCTTCT TCTTCAGAGCCAATAAGCAGGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAGCAGCTAGACAGCTGGGGGATGTCTTCTTCCCCGC TGCTTTCTGCTGACTCTGTTGATAATTTGATCCAATCACCTCCGACTGAGTCGGACTGTTTCTCACCAAGAAGCAGCGGTCTCTTGGAAGCTGTACTCTA CGAATCAAAGATGCTGGGAAACATGAACTGGTCTTCTGTTGCTCCTGAGGACATGATGAACCACCCACCACAACCCTTAAATTCCCGGAAGAGGGATTTG GAAGTGCAAACTGACCCGAATTCGCCATTGGGTCATCCTGCTGCATCAGTGTTCAATGCAAGTACCCCGATGAGTGGAAGCTCATTAGATGAACCAGGGT ATGAAATGAAGCAGGAGATGGCGAGCCAAGTTTCAACTCCATGTGTGGAGGATAATGATGGTAGCAGCTGTAGGCATATAGATTTCAGCAGGCCAGATGT CTTACTTGGCTTAGGGAGCTACTTCGGGCTAAGCTGA
AA sequence Show only first row Show all	>Lus10036103 pacid=23141078 polypeptide=Lus10036103 locus=Lus10036103.g ID=Lus10036103.BGIv1.0 annot-version=v1.0 MPNGSEEKKRSKGRRDSTAGIEQGSSALKKGPWTSGEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLRKGAFTPDEERLIIELHAK MGNKWARMAAEMPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVCSKIRDGSQESMGTDSNADGLPDPAQNHHREIPELNFKNLKINRGVLSYLPNLLDVP ASSFLKQGLGSSNDYGFMLPTLPPPPKRLRADSILPGVDGSAVSSGFPPYCQFPDYACESIPEHFGCLTSPYDSDVNTYDDQPPMAVLPGSHALLNDDSS SSEPISRAMKLELPSLQYTETQQLDSWGMSSSPLLSADSVDNLIQSPPTESDCFSPRSSGLLEAVLYESKMLGNMNWSSVAPEDMMNHPPQPLNSRKRDL EVQTDPNSPLGHPAASVFNASTPMSGSSLDEPGYEMKQEMASQVSTPCVEDNDGSSCRHIDFSRPDVLLGLGSYFGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10036103 [exp]	0	1
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	1.0	0.8699
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	8.5	0.8623
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	12.1	0.8591
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	24.2	0.8420
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	27.4	0.8449
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	31.1	0.8502
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	32.7	0.8532
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	36.4	0.8405
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	38.2	0.8101
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	49.1	0.8406

Compare expression of checked genes

Lus10036103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.