Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 303 / 9e-98 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 261 / 6e-82 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 244 / 1e-76 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 181 / 3e-51 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 144 / 3e-37 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 140 / 1e-35 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 136 / 3e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 138 / 5e-35 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 137 / 1e-34 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 134 / 1e-33 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018124 [exp] 599 / 0 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 262 / 2e-82 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10026477 [exp] 255 / 1e-80 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 256 / 2e-79 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 254 / 8e-79 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 256 / 9e-79 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 255 / 3e-78 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 248 / 2e-76 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 246 / 9e-76 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045300 [exp] 295 / 2e-94 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 271 / 6e-85 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 264 / 2e-82 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 263 / 1e-81 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 258 / 4e-80 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 243 / 2e-74 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.017G078600 [exp] 139 / 1e-36 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.002G114800 [exp] 141 / 8e-36 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 140 / 9e-36 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 140 / 1e-35 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10036141 pacid=23141148 polypeptide=Lus10036141 locus=Lus10036141.g ID=Lus10036141.BGIv1.0 annot-version=v1.0 ATGTTGGATCTTAATCTGAATGTGGAATCGGCCGAGTCGGCTCACGATTCTTACTCGGTCTCTTTCGTGGAGAACAAATACGAGTGCCATATGCTGCAGC CCGAGGCATCTGGGACGTCTAACTCGTCGGTCGTTAATGCGGACGTGTCGAGCAACGAAGAGTCGTGCTCCACACGCGCTGAAGCTGCCAACAACAACGG AAGCTACCGCAGCGGCGGCAACCCCATCCGTGCTTTCAACTTTGATATAATTAAAGTTGATACCGACGAAGCGGACGTCGTTGTTACCAAAGACTTCTTC CCAGTGAGCCACGGGAAGCTAGAATCGGGTGGGGGCTTCCTTTGCCCGCCGGGGAATTGGATCGATCTGACGTTCCACAGGCAGGAAGAGATTGCCAGTG GTGGTGGTGGAAACGGGGGAGCGGTGCGGGTGATACATCAAGCGTCACAGCAAGCGAAGAAGAGCAGGAGGGGCCCAAGGTCCCGAAGCTCACAGTACAG AGGAGTTACCTTTTACAGGCGCACTGGGAGATGGGAATCTCATATATGGTACTACTGCCTTCTCTGGACTGCGGGAAACAGGTTTATCTGGGTGCGCATA CTGCTTGTTGCATTTGTTCACAGTGGTGGATTTGACACTGCTCATGCTGCTGCGAGAGCCTATGATCGAGCTGCTATCAAGTTCAGGGGAGTTGATGCTG ACATCAACTTTAGTCTTGGAGACTATGAGGAAGATATGGAGCAGATGAAGAATCTGGCAAAGGACGAATTTGTGCATATATTGCGTCGCCAAAGCACTGG TTTCTCCAGAGGGAGTTCAAAATATCGAGGAGTGACGTTGCACAAATGTGGCAGGTGGGAAGCTAGAATGGGACAGTTCCTTGGGAAAAAGTATATATAT CTTGGACTGTTCGACAGCGAGGTAGAAGCTGCAAGGGCATATGACAAGGCAGCCATCAACTGCAACGGGAGGGAAGCGGTTACCAACTTTGAGCCCAGTA CATATGTTGGGGAGATGCCTTCTGACTCTCGTATCGAAGGAACAGGACATAACCTCAACCTTAACTTGGCAATATCACCTTCTTTAGCCGGTTGTTCTAT GGAAACTGGAGGTCAACTTCCGTTCCATTCAAAGATGGAGAACCGAATGGGCAAAATGGTTAGTAATGGTCTTGCAACGATGACTGATCACGCAATGCCC GTAAACGGTGCATATGCCACTTTCTTCAAGAGCGAGGAAAGAGGGACAGAGAAGATAATAGGAGAAGCGTCTTCTAAGTCGGCGTATGGCCTTATGGCAT TGTTTCCAACAACAGCAGCATCATCAGGATTCTCAGCTTCGGCTAACTTTCATCATCCTTCGCCTCCCATTTCTGCATCAGAACCTTTTCACCAGGCAAC AGCAACAGCAGCAGCCCATGTGTTTGGTCTTGGACCATCTGCCATTGCCTTGCCTTCCAATGGCTCTCAGTTTTACTATTCCACGAACCTGCATCAACCA CACTAA
AA sequence Show only first row Show all	>Lus10036141 pacid=23141148 polypeptide=Lus10036141 locus=Lus10036141.g ID=Lus10036141.BGIv1.0 annot-version=v1.0 MLDLNLNVESAESAHDSYSVSFVENKYECHMLQPEASGTSNSSVVNADVSSNEESCSTRAEAANNNGSYRSGGNPIRAFNFDIIKVDTDEADVVVTKDFF PVSHGKLESGGGFLCPPGNWIDLTFHRQEEIASGGGGNGGAVRVIHQASQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWYYCLLWTAGNRFIWVRI LLVAFVHSGGFDTAHAAARAYDRAAIKFRGVDADINFSLGDYEEDMEQMKNLAKDEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIY LGLFDSEVEAARAYDKAAINCNGREAVTNFEPSTYVGEMPSDSRIEGTGHNLNLNLAISPSLAGCSMETGGQLPFHSKMENRMGKMVSNGLATMTDHAMP VNGAYATFFKSEERGTEKIIGEASSKSAYGLMALFPTTAASSGFSASANFHHPSPPISASEPFHQATATAAAHVFGLGPSAIALPSNGSQFYYSTNLHQP H

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	1.0	0.8182
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	4.9	0.8085
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	11.1	0.7381
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	11.8	0.7913
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	16.9	0.8170
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	25.1	0.7154
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10015704 [exp]	36.7	0.7603
					Lus10023285 [exp]	36.9	0.7373
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	55.9	0.7578
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	86.0	0.7165

Compare expression of checked genes

Lus10036141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.