Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30450 1483 / 0 HAP5, ATCCC1, CCC1 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003407 [exp] 1850 / 0 AT1G30450 1520 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10000067 [exp] 471 / 1e-160 AT1G30450 403 / 6e-135 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357600 [exp] 1510 / 0 AT1G30450 1458 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Potri.011G090900 [exp] 1497 / 0 AT1G30450 1456 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10036156 pacid=23140990 polypeptide=Lus10036156 locus=Lus10036156.g ID=Lus10036156.BGIv1.0 annot-version=v1.0 ATGGACAATGGAGACGTTGAGGAAGGTGACTTCCCTGGTCGTGGTGGTCGCAAATACCAGCCGGTGGTCGCTCACGACAGTGCCGTGCTTGAGATGTCTA ATTTGGATCCAGGATCTACTTCTTCTCCCACCAAACGCCCGCGCGACCTCAACATAAATGTGAAAGTTGGCACCGTAGCATCAGATCCGACTGATCCTCA CGATCCTTCTCATGGAGGTGGCAGTAGAGGTGGCAGGGAATACAACTTGGAGTTGTTTGGTTTTGATTCTCTTGTCAACATTCTTGGCCTTAAAAGTATG ACAGGAGAACATGTTCCATCAACTTCTAGCCCTGGGGACGGTGATGACCATGCTGTTCCTTTTGAACGTCCACGGGTTGATGCTCTAAAAATGGGAACTA TGATGGGTGTTTTTATTCCATGCCTGCAGAGCATAATGGGAATTATATACTACATACGATTTTCTTGGATCATTGGCATGGCTGGTATAGGTCAATCATT AGTGCTGGTAGCTTGTTGTGGTTTATGTACTTTCCTTACTGTTTTATCACTGAGTGCGATTGCCACAAATGGTGCAATGAAGGGTGGGGGTCCATATTAT CTCATTGGTCGTGCCCTTGGCCCAGAGGTGGGAGTTAGTATTGGATTGTGTTTCTTCCTTGGGAATGCAGTTGCTGGAGCCCTTTACGTGTTGGGAGCTG TTGAAACATTTCTAAAAGCTGTACCAGCTGCCGGCATTTTTAGAGTGACTATAACACAAATCAACGGAACAACAGCTGCAGAGCCCATACAAGCTCCAAG TTCACATGACCTGCAAATTTATGGGATTGTTATTACCATCATTTTATGCTTCATTGTGTTTGGTGGTGTGAAAATGATCAATCGCGTCGCACCTGCTTTC CTGATACCTGTTCTATTTTCAATGTCTTGCATCTTTACTGGATGGTTTTTGGCAAGGAATGATTATCCTGCAAAGGGAATAACGGGCTTGAGCATGCAAA GCTTTAAAGAGAACTGGGGTTCAGCGTATCAGTTCACCAATGATGTTGGGATACCTGATCCTCAGGGTGATGTCTACTGGAATTTCAATGCTCTAGTAGG TCTCTTTTTCCCTGCTGTAACTGGAATAATGGCGGGTTCCAATAGATCTGCGGCACTAAAAGACACCCAGCGGTCAATTCCAGTCGGGACATTGGCTGCT ACTCTTACTACCACTGCTCTCTATCTCGTTTCAGTGTTGTTTTTTGGTGCCGTTGCCACCAGGCAAAAACTTCTAACTGACAGGCTACTCACAGCCACAA TTGCTTGGCCATCCCCTGCAATTATCTATATCGGAATTATCCTTTCTACCTTGGGTGCTGCCCTCCAAAGCTTGACTGGAGCCCCACGCCTTCTTGCCGC GATAGCCAATGATGATATTCTACCTTTACTTAACTACTTCAAAGTGCCCGAGAACCAGGAGCCTCATGTTGCTACTCTGTTCACTGCATTAATCTGTATT GGATGTGTTATTATTGGCAATCTGGATCTTATAACGCCAACTGTGACAATGTTTTTCCTTTTGTGTTATTGTGGTGTCAATTTGTCATGTTTCCTTCTCG ACCTTCTTGATGCCCCTAGTTGGCGACCACGCTGGAAGTTCCATCATTGGAGCCTTTCTCTTCTTGGAGCATCGCTTTGTATAGTTATAATGTTCTTGAT CTCCTGGTCGTTTACTATCGTATCTCTCGGTCTTGCAAGTCTCATATATAAATATGTCGGCATTAAGGGTAAGGCTGGAGACTGGGGTGACGGCTTTAAG AGTGCATATTTTCAACTGGCACTCCGTAGTCTGCGTTCACTTGGAGCTAACCAAGTGCATCCGAAGAATTGGTATCCTATTCCTCTCATATTCTGCCGTC CATGGGGTAAGCTGCCAGAAAATGTACCGTGCCACCCTAAGCTGGCTGATTTTGCAAATTGCATGAAGAAAAAGGGCCGTGGAATGTCTATATTTGTTTC CATATTAGATGGAGACTATCATGAATGTGCTGAAGATGCCAAGACAGCATGCAAACAACTCAATACTTACATTGATTACAAGCGGTGTGAAGGTGTTGCG GAAATAGTGGTGGCCCGTAATATGTCTGACGGCTTCCGTGGAATCATTCAGACGATGGGATTGGGAAATCTCAAGCCTAACATTGTGGTGATGAGGTATC CAGAAATATGGCGGCGCGAAAATCTGACGGAGATTCCAGCCACATTTGTGGGAATTATCAATGACTGCATCGTTGCAAACAAGGCGGTAGTCATTGTGAA GGGTCTTGATGAGTGGCCTAACGAGTATCAAAAGCAATATGGCACCATTGATTTGTATTGGATTGTAAGAGATGGAGGTCTAATGCTCTTGCTTTCGCAG CTCCTGCTTACCAAAGACAGCTTCGAGAGTTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCAGATGCAGAGGAGCTGAAAGCTGATGTGAAGA AGTTTTTATATGATCTACGAATGCAAGCTGAAGTGATAGTGATATCAATGAAATCATGGCACTCAAATGCAGAAGGTGCTCAACCAGACGAATCATTGGA AGCATTCAATGCTGCTCAAAAGCGAATTGCGAGTAATTTGTCAGAGATGAGGTCGAACATGTCAGTGAACGAGCAGCAGGTAGACAAATATCTTCAAACA ACGCTGAAATTGAACACAACGATATTAAGACATTCGAGAATGGCTGCAGTGGTACTTGTGAGCTTGCCGCCTCCGCCAGATAACCATCCAGCCTACTTCT ATATGGAATACATGGATCTATTAGTAGAGAATGTGCCAAGGCTTTTAATTGTCAGAGGCTACCGTAAAGATGTTGTAACATTATTTACTTAG
AA sequence Show only first row Show all	>Lus10036156 pacid=23140990 polypeptide=Lus10036156 locus=Lus10036156.g ID=Lus10036156.BGIv1.0 annot-version=v1.0 MDNGDVEEGDFPGRGGRKYQPVVAHDSAVLEMSNLDPGSTSSPTKRPRDLNINVKVGTVASDPTDPHDPSHGGGSRGGREYNLELFGFDSLVNILGLKSM TGEHVPSTSSPGDGDDHAVPFERPRVDALKMGTMMGVFIPCLQSIMGIIYYIRFSWIIGMAGIGQSLVLVACCGLCTFLTVLSLSAIATNGAMKGGGPYY LIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRVTITQINGTTAAEPIQAPSSHDLQIYGIVITIILCFIVFGGVKMINRVAPAF LIPVLFSMSCIFTGWFLARNDYPAKGITGLSMQSFKENWGSAYQFTNDVGIPDPQGDVYWNFNALVGLFFPAVTGIMAGSNRSAALKDTQRSIPVGTLAA TLTTTALYLVSVLFFGAVATRQKLLTDRLLTATIAWPSPAIIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPLLNYFKVPENQEPHVATLFTALICI GCVIIGNLDLITPTVTMFFLLCYCGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGASLCIVIMFLISWSFTIVSLGLASLIYKYVGIKGKAGDWGDGFK SAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLNTYIDYKRCEGVA EIVVARNMSDGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQ LLLTKDSFESCKIQVFCIAEEDSDAEELKADVKKFLYDLRMQAEVIVISMKSWHSNAEGAQPDESLEAFNAAQKRIASNLSEMRSNMSVNEQQVDKYLQT TLKLNTTILRHSRMAAVVLVSLPPPPDNHPAYFYMEYMDLLVENVPRLLIVRGYRKDVVTLFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	1.7	0.9434
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	3.5	0.9257
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	3.5	0.9215
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	3.9	0.9206
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	4.2	0.9248
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	4.9	0.8869
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	4.9	0.9161
AT4G24840			unknown protein		Lus10009908 [exp]	5.9	0.9150
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	8.0	0.8840
AT5G54920			unknown protein		Lus10016477 [exp]	8.1	0.8862

Compare expression of checked genes

Lus10036156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.