Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09400 1111 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G33530 1058 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT1G60160 828 / 0 Potassium transporter family protein (.1) AT4G13420 568 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT4G19960 545 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT2G35060 539 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 533 / 2e-179 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G40540 527 / 5e-177 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 511 / 7e-171 Potassium transporter family protein (.1) AT3G02050 497 / 2e-165 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003402 [exp] 1328 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10012993 [exp] 807 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 559 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 550 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10027004 [exp] 548 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 538 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10038361 [exp] 537 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 528 / 1e-177 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036221 [exp] 524 / 5e-176 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023900 [exp] 1146 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 1139 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.010G094400 [exp] 826 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.001G069650 [exp] 582 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 578 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G132500 [exp] 570 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 562 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 561 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 554 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 550 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10036160 pacid=23141222 polypeptide=Lus10036160 locus=Lus10036160.g ID=Lus10036160.BGIv1.0 annot-version=v1.0 ATGAGCAGGAAGTTTATTCTTGCTTTGCAGACACTTGGTGTTGTATTTGGTGATGTTGGAACAAGTCCCTTGTACACATTTGATGTCGTTTTTACAAAAG CATCGATTAGTGGAGAAGAAGATGTACTGGGTGCATTGTCATTGGTCCTATATACGTTGATCTTAGTACCTCTTCTCAAATATGTCATGGTTGTTCTTTG GGCAAATGATGATGGAGAAGGAGGTACTTTTGCTTTGTACTCGTTGATTTGCCGGCATGCTAAGGTCAGTCTTCTTCCAAATCAGCTCCCTTCAGACACT CGTATTTCAAGCTTCCGGCTGAAGGTGCCATCTCCAGAGCTGGAGAGATCATTAAAAATCAAGGAAAGGCAAGAGAATTCACTAACTCTGAAAAAGCTAC TGCTGATTTTAGTGCTTGCTGGTACTTCAATGGTGATTGCTGATGGAGTTGTTACTCCAGCGATGTCAGTGATGTCAGCTGTTGGTGGTTTGAAGGTTGG AGTAGCTTCAGTAGAGCAAGACCAAGTGGTGATGATTTCCGTAGCCTTTCTTGTAATTTTGTTTAGTTTACAGAAATTTGGTACAAGCAAAGTGGGACTT GCTGTGGGTCCTGCTCTATTTGTATGGTTTTGTTCTCTAGCTGGCATTGGGATTTATAATCTTGTCAAATATGACAACAGAGTATTAAGAGCTTTCAATC CTGTTTATATCTATTACTTCTTCAAGCGGGATTCAGCAAAGGCCTGGCGTGCTCTTGGAGGTTGCCTTTTATGTGCAACTGGTTCTGAAGCCATGTTTGC GGATCTTTGCTATTTTTCTGTAAGATCAATCCAGCTTACTTTTGTATTGCTTGTGTTGCCTTGCCTTTTGCTGGGTTATTTGGGTCAAGCTGCATATTTG ATGCAAAATCATACCGAAGTTCTGGCTGAACAGGCTTTCTTTTCTTCGGTTCCAAGTGGTGCTTTCTGGCCTGTATTCCTTATTGCCAATTTTGCTGCAT TAATTGCATGTCGAGCAATGACAACGGCTACATTTTCTTGTATAAAACAGTCAACAGCACTTGGTTGTTTCCCGAGACTTAAGATTATTCACACTTCTCG AAAGTTCATGGGTCAAATATATATTCCAGTCATAAACTGGTTTCTACTGGGGATGTGTCTAGTGTTCGTCTGCTCTATTCAAAGCATAACCGAGCTGGGA AATGCATACGGGATTGCCGAGCTTGGGGTGATGATGATGACAACCATTTTGGTGACGCTTGTTATGCTTCTAATCTGGCAGATAAATATCTTGGTTGTTT TCAGCTTTCTTGTTATCTTCCTGGGAATTGAATTGACATTTTTCTCATCGGTTTTGAGCGATATGGGAGATGGAAGTTGGATAGTATTGGTGTTTGCTGG AATTATGTTCCTTATCATGTATATTTGGAACTATGGAAGCAAGCTCAAATATGAAACTGAAGTGAAACAGAAGTTGTCTATGGATTTGATGCGGGAATTA GGTTCCAATCTGGGAACAATTAGGGCTCCTGGAATTGGGTTGCTTTACAACGAGCTGGTGAAAGGAATACCTGCAATATTTGGTCATTTTCTGACAACTC TTCCAGCAATTCATTCAATGATCATCTTTGTGTGTATAAAGTATGTCCCAGTCCCAGTTGTACCTCAAAGCGAAAGGTTCCTTTTCCGTCGAGTCTGCCC AAAAGGCTACCATATATTCCGTTGCATAGCCAGGTACGGGTACAAAGATGTGCGGAAAGAGAATCACCAGGCATTTGAACAGCTGTTAATTGAGAGTCTG GAGAAGTTCATTAGGAGGGAGGCGCAGGAGCGGTCGCTGGAAAGTGAGGGAGATGATGATACAGAGTTGGAAGATGATTACAGTAACACTAGAGTATTAG TGGCTCCAAATGGAAGTGTGTATTCGCTTGGTATACCCCTTCTAGGAGAGTACGAGGAAACAAGTAGAAAAAGTGTTGTTTCAGAGGGGAGCACTTCTTC AGAGGTAGTGAAATCAGATGCGGTGGTTGATCCTGAGCAGAGTCTTGAGAGTGAGCTATCTTTCATTAGAAAAGCTAAAGAATCAGGCGTGGTTTATCTT CTTGGACACGGTGATATTAGAGCAAGGAAGGAATCGTGGTTCATCAAGAAGCTAGTGATTAACTACTTTTATGCTTTCTTGCGAAAGAACTGCAGAAGAG GGATTGCCAATTTGAGTGTTCCTCACTCAAATCTCATGCAGGTTGGCATGACATACATGGTTTGA
AA sequence Show only first row Show all	>Lus10036160 pacid=23141222 polypeptide=Lus10036160 locus=Lus10036160.g ID=Lus10036160.BGIv1.0 annot-version=v1.0 MSRKFILALQTLGVVFGDVGTSPLYTFDVVFTKASISGEEDVLGALSLVLYTLILVPLLKYVMVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDT RISSFRLKVPSPELERSLKIKERQENSLTLKKLLLILVLAGTSMVIADGVVTPAMSVMSAVGGLKVGVASVEQDQVVMISVAFLVILFSLQKFGTSKVGL AVGPALFVWFCSLAGIGIYNLVKYDNRVLRAFNPVYIYYFFKRDSAKAWRALGGCLLCATGSEAMFADLCYFSVRSIQLTFVLLVLPCLLLGYLGQAAYL MQNHTEVLAEQAFFSSVPSGAFWPVFLIANFAALIACRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLGMCLVFVCSIQSITELG NAYGIAELGVMMMTTILVTLVMLLIWQINILVVFSFLVIFLGIELTFFSSVLSDMGDGSWIVLVFAGIMFLIMYIWNYGSKLKYETEVKQKLSMDLMREL GSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKGYHIFRCIARYGYKDVRKENHQAFEQLLIESL EKFIRREAQERSLESEGDDDTELEDDYSNTRVLVAPNGSVYSLGIPLLGEYEETSRKSVVSEGSTSSEVVKSDAVVDPEQSLESELSFIRKAKESGVVYL LGHGDIRARKESWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNLMQVGMTYMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	0	1
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	5.7	0.7753
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Lus10011159 [exp]	11.6	0.7648
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	16.2	0.7503
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	17.4	0.7583
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	17.5	0.7613
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	20.1	0.7535
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	21.1	0.7638
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	22.5	0.7443
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	23.9	0.7281
AT2G32240			unknown protein		Lus10003812 [exp]	26.9	0.7628

Compare expression of checked genes

Lus10036160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.