Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20760 395 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 54 / 2e-08 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G01800 53 / 8e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G03330 50 / 9e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 49 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 49 / 1e-06 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 49 / 2e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 46 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G24190 43 / 0.0001 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G23420 43 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038343 [exp] 456 / 6e-163 AT4G20760 378 / 8e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 54 / 4e-08 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10014689 [exp] 52 / 2e-07 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10026419 [exp] 52 / 2e-07 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 51 / 3e-07 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038857 [exp] 51 / 5e-07 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10014690 [exp] 50 / 5e-07 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032525 [exp] 50 / 8e-07 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 49 / 1e-06 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157300 [exp] 419 / 5e-149 AT4G20760 436 / 9e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 58 / 1e-09 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 52 / 1e-07 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G127700 [exp] 50 / 9e-07 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 49 / 1e-06 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 49 / 2e-06 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 47 / 4e-06 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G235500 [exp] 47 / 5e-06 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G128800 [exp] 47 / 7e-06 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.004G235600 [exp] 46 / 1e-05 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10036204 pacid=23169370 polypeptide=Lus10036204 locus=Lus10036204.g ID=Lus10036204.BGIv1.0 annot-version=v1.0 ATGGCGATGAAGCATTTTCTATTAAACAACGTCCAACACATCGCAAAGTTGACGATGGCTTTCAGATCGACGAGAACCGCTTCTTTTGCATCCGCTTCTA GAGTAGGCGGTGGCGTCTCGATGGTACAAGGCGCCTCCAGAGGAATTGGTCTCGAATTCGTTAAACAACTCCTGGAAAGGAACGAGAATGGTAGTGTTGT AGCCACTTGTCGAAATCCCGATGGGGCAACGGGATTGTTGGAGTTGAAGAACAAGTATGCTGAACGACTCAGTATTTTTCCATTGGACCTCACCGTTGAG AGTACCATCCAGGCATCCGCAGAGTTCATAATGAGCCAGTACGGTTCTCTTAACCTTCTTATCAATGCATCAGGCATTTTGTCCATACCGAATGTCATTC AACCAGAGACGACATTGAGCAAAGTGGAGAAATCTTCGTTAATGTTAGCTTATGAAGTTAATGCTGTTGGCCCTATTCTAGTCATCAAGCACATGTGGCC TCTGCTGAAAGCTGGAGGAGGCCAACATACTACTGGAAAAGATTTTGCTGTTATAGCAAGTCTGAGTGCCAGGGTGGGATCTATTGGCGATAATAAACTT GGGGGTTGGCACTCCTACCGCAGTTCAAAGATAGTATCCAAGACGGTGTCGGTGGAATTGGGAAGGAAGAAGGATCCGATAATATGTATAGTTCTTCATC CGGGGACAGTGGATACAGACCTTTCAAGGCCATTCCAGAAGAATGTTCCGAAAGACAAACTGTTCACCAAGGAGTTCTCTGCACAGAAGCTACTGGGCAT CATCGATAATACAAAGATTACTGACAATGGCAAGTTCTTCGGTTGGGATGGCCAAGAAATTCCTTGGTGA
AA sequence Show only first row Show all	>Lus10036204 pacid=23169370 polypeptide=Lus10036204 locus=Lus10036204.g ID=Lus10036204.BGIv1.0 annot-version=v1.0 MAMKHFLLNNVQHIAKLTMAFRSTRTASFASASRVGGGVSMVQGASRGIGLEFVKQLLERNENGSVVATCRNPDGATGLLELKNKYAERLSIFPLDLTVE STIQASAEFIMSQYGSLNLLINASGILSIPNVIQPETTLSKVEKSSLMLAYEVNAVGPILVIKHMWPLLKAGGGQHTTGKDFAVIASLSARVGSIGDNKL GGWHSYRSSKIVSKTVSVELGRKKDPIICIVLHPGTVDTDLSRPFQKNVPKDKLFTKEFSAQKLLGIIDNTKITDNGKFFGWDGQEIPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10036204 [exp]	0	1
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	2.0	0.8406
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	15.0	0.7757
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	16.7	0.8261
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	25.6	0.7773
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	27.4	0.7748
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	33.7	0.8203
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	34.0	0.7967
AT2G45990			unknown protein		Lus10014766 [exp]	38.9	0.7533
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	53.5	0.8056
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	57.4	0.7212

Compare expression of checked genes

Lus10036204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.