Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 1033 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 1018 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 887 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT3G02050 555 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 549 / 0 Potassium transporter family protein (.1) AT2G40540 542 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 538 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT5G14880 530 / 6e-178 Potassium transporter family protein (.1) AT1G70300 530 / 7e-178 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT4G13420 511 / 8e-171 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038361 [exp] 1216 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10018324 [exp] 1094 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10012993 [exp] 540 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10030857 [exp] 539 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 529 / 2e-177 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 526 / 2e-176 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10036160 [exp] 515 / 1e-172 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10027004 [exp] 513 / 9e-172 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10003402 [exp] 515 / 3e-171 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123800 [exp] 1118 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 1099 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123700 [exp] 964 / 0 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 912 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 610 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 596 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094400 [exp] 563 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.009G073500 [exp] 541 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.013G083400 [exp] 535 / 9e-180 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.019G056500 [exp] 534 / 1e-179 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10036221 pacid=23169427 polypeptide=Lus10036221 locus=Lus10036221.g ID=Lus10036221.BGIv1.0 annot-version=v1.0 ATGAGTATGAATATGGAAGGTGGTGGTATTGAAGGAGGAAACAGTGAGTCCAACAAAGGTAGTATGTGGGATTTAGATCAGAAGCTTGATCAATCCATGG ACGAGGAAGCTGGAAAGCTCAAAAATATGTACAGAGAAAAGAAATTCTCATCACTTCTGCTTCTGAGGCTAGCATTTCAGAGTTTGGGAGTTGTTTATGG AGACTTGGGTACTTCTCCATTGTATGTGTTCTACAACACTTTCCCCAATGGAATCTCCGACCCGGAAGATGTGATTGGAGCTCTATCATTGATCATATAC TCTCTTACTCTTGTACCTCTCATCAAGTATGTCTTCATTGTGTGCAGAGCTAATGACAATGGTCAAGGCGGAACATTGGCTCTGTACTCATTGCTTTGCC GGCATGCGAAAGTGAAAACTATTCCGAATCAACACCGGACTGACGAGGATCTAACAACGTACAGCCGCTCTACCTTCCATGAACAGTCTTTTGCAGCAAA AACGAAGCGATGGTTAGAGGGACATGCATGTCGTAAGACTGCGCTTCTTCTTCTTGTTCTTGTTGGGACCTGTATGGTTATTGGCGATGGAATCCTCACT CCTGCCATATCTGTTCTTTCGGCTGCTGGTGGGATCAAGGTGAACAGTCCGAAAGTTAGCAATGATGTGGTGATACTAGTTGCGGTTGTAATATTAGTAG GTCTTTTCAGCATGCAACATTACGGGACCGATAAAGTTGGTTTGTTCTTTGCTCCAATCGTCCTGCTTTGGTTTCTGTTAATTGGAGGCATTGGCATATA CAATATCTGCAAGTATGACAAAAGTGTTCTTAAAGCCTTTTATCCTCTATATGTTTACCGGTACCTTAGAAGGGGAGGCAGAGAAGGCTTTTTATCTCTT GGTGGTATCATGCTCAGTATTACGGGTACCGAGGCACTTTTCGCTGATCTAGCTCATTTCCCAGTAGCAGCCATTCAGCTTGCTTTTACTGTGGTTGTTT TCCCTTGCCTTCTTCTTGCATATTCCGGGCAAGCTGCTTATCTAATGAAGAACCAGGAACACGTGGTCGATGCGTTTTATCATTCTATTCCAGATAGGAT ATATTGGCCGGTGTTTCTCGTTGCTACTGCAGCTGCTATCGTTGCGAGTCAGGCCACGATCTCTGCAACTTTTTCAATAATCAAGCAGGCACATGCTCAT GGCTGTTTCCCTAGAATCAAAGTAGTGCATACATCGAAGAAGTTCCTCGGGCAGATATATGTCCCGGATATCAATTGGATCCTAATGGTTCTCTGTATCT GCGTGACTGCTGGATTCAGAAAGCAAAGCCAAATTGGGAACGCTTATGGAACAGCAGTGGTGATAGTAATGCTGGTCACCACCTTACTCATGGTCCTCAT AATGATCCTCGTATGGCGCTCTCACTGGACCCTCGTCGTGATCTTTACCACCTTATCCCTTGTCGTGGAATGCACCTACTTCTCGGCTGTGCTCTTCAAG GTCAACCAAGGCGGCTGGGTCCCTCTCGTCATTGCAGGTGCTTTCCTCATCATCATGTATGTTTGGCATTATGGCACAGTCAAGCGCTACGAGTTTGAAA TGCACAGTAAGGTCTCTATGGCGTGGATTGTCGGACTCGGTCCCAGTCTAGGACTCGTGAGGGTCCCCGGGATCGGCCTGTTTTTTGGTGTGTCAAGGCT CTTCCCGCCAGCCATCCACTCGGTTGTAGTTTTCGTGTGCGTCAAGTATCTTCCCGTCTACACAGTCCTGGAAGAGGAACGGTTTCTGGTCAAGAGAATC GGCCCCAAGAACTTCAGGATGTTCAGGTGTGTGGCCAGGTACGGCTACAAGGACCTCCCCAAGAAAGAAGAAGAATTTGAGAAGAAGCTATTCGACAGTC TCTACCTCTTTGTTCGGCTCGAGTCCATGATGGAAGGATGCTCGGATTCCGACGAGTACAGCTTGTACGGCCAACAAAACGAACGTTCAAGGGATGTGAG CTCACTCGAGGATCCGACAATGTCGTCCAATGATTCGATAGTGCAGGTGGTGAAGCCATTATCGGTGTACCGGACAAATGGGTCGTCTGGGCAGACGAGT AGCCACACGGAGGTCGATGAGGTGGAGTTTTTGCACGGATGTCGAGATGCCGGAGTTGTACATATCATGGGGAACACCGTTGTGAGAGCTAGGAGGGAGT CGAGGTTTTACAAGAAGATAGCGGTTGATTACATATATGCATTCCTTAGGAAGATATGTCGAGAGCACAGTGTGATATTCAATATCCCTCACGAGAGCCT CTTGAACGTTGGCCAGATCTTCTATGTCTAA
AA sequence Show only first row Show all	>Lus10036221 pacid=23169427 polypeptide=Lus10036221 locus=Lus10036221.g ID=Lus10036221.BGIv1.0 annot-version=v1.0 MSMNMEGGGIEGGNSESNKGSMWDLDQKLDQSMDEEAGKLKNMYREKKFSSLLLLRLAFQSLGVVYGDLGTSPLYVFYNTFPNGISDPEDVIGALSLIIY SLTLVPLIKYVFIVCRANDNGQGGTLALYSLLCRHAKVKTIPNQHRTDEDLTTYSRSTFHEQSFAAKTKRWLEGHACRKTALLLLVLVGTCMVIGDGILT PAISVLSAAGGIKVNSPKVSNDVVILVAVVILVGLFSMQHYGTDKVGLFFAPIVLLWFLLIGGIGIYNICKYDKSVLKAFYPLYVYRYLRRGGREGFLSL GGIMLSITGTEALFADLAHFPVAAIQLAFTVVVFPCLLLAYSGQAAYLMKNQEHVVDAFYHSIPDRIYWPVFLVATAAAIVASQATISATFSIIKQAHAH GCFPRIKVVHTSKKFLGQIYVPDINWILMVLCICVTAGFRKQSQIGNAYGTAVVIVMLVTTLLMVLIMILVWRSHWTLVVIFTTLSLVVECTYFSAVLFK VNQGGWVPLVIAGAFLIIMYVWHYGTVKRYEFEMHSKVSMAWIVGLGPSLGLVRVPGIGLFFGVSRLFPPAIHSVVVFVCVKYLPVYTVLEEERFLVKRI GPKNFRMFRCVARYGYKDLPKKEEEFEKKLFDSLYLFVRLESMMEGCSDSDEYSLYGQQNERSRDVSSLEDPTMSSNDSIVQVVKPLSVYRTNGSSGQTS SHTEVDEVEFLHGCRDAGVVHIMGNTVVRARRESRFYKKIAVDYIYAFLRKICREHSVIFNIPHESLLNVGQIFYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036221 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	2.0	0.7985
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	6.0	0.7484
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	13.6	0.7121
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	15.4	0.7346
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	32.4	0.7088
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	35.8	0.6768
AT5G04420			Galactose oxidase/kelch repeat...		Lus10038666 [exp]	36.3	0.6376
AT4G01290			unknown protein		Lus10007916 [exp]	44.1	0.6822
AT1G32120			unknown protein		Lus10011779 [exp]	45.7	0.6994
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	46.5	0.6893

Compare expression of checked genes

Lus10036221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.