Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 441 / 3e-144 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 437 / 6e-143 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 407 / 3e-131 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT4G13420 327 / 1e-100 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 319 / 1e-97 Potassium transporter family protein (.1) AT5G14880 314 / 6e-96 Potassium transporter family protein (.1) AT2G30070 309 / 1e-94 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 305 / 1e-92 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G40540 303 / 1e-91 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT4G23640 273 / 8e-81 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038362 [exp] 619 / 0 AT1G31120 317 / 9e-99 K+ uptake permease 10, K+ uptake permease 10 (.1) Lus10029172 [exp] 488 / 1e-162 AT2G30070 590 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10014531 [exp] 484 / 2e-161 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10036221 [exp] 464 / 2e-153 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10018324 [exp] 460 / 1e-151 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10012888 [exp] 454 / 2e-150 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 434 / 1e-142 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10024709 [exp] 428 / 2e-140 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 429 / 1e-139 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123700 [exp] 497 / 6e-166 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123800 [exp] 488 / 1e-162 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 484 / 4e-161 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 482 / 5e-160 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G069799 [exp] 333 / 3e-104 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 332 / 3e-102 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 330 / 6e-102 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G132500 [exp] 325 / 3e-100 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.009G073500 [exp] 317 / 2e-97 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.019G056500 [exp] 317 / 7e-97 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10036222 pacid=23169322 polypeptide=Lus10036222 locus=Lus10036222.g ID=Lus10036222.BGIv1.0 annot-version=v1.0 ATGGCTGCAAATGGCGATGAGGCAGCCAACAAAAATGGCAGATTGTGGGCACTTGATCAACAGTTCGATCAGCCGATGGATGTGGAAGCTGATTGCATCA AGCCCCAGAATGACGAATCGAAGCCTTCCACATTCGTGCTCTTGAGGCTGGCTTTCCAAAGCCTTGGAATTGTGTATGGAGATTTAGGCACCTCTCCATT GTATGTGTTCTACAACACATTCCCGAACGGGATTGAGGATCCGGAAGATGTGGTTGGTGCTCTATCGTTCATCATTTACTCCCTTGCTCTCATTCCTCTG GTGAAGTATCTCTTCATTGTTTCTAGAGCAACTGACAATGGTCAAGGTGGGACTTTTGCTCTTTATTCACTACTGTGTAGGCATGCCAAAATAAGGACGA TACCGAACCAAGATCATACCGACGAAAGGCTGAGGACGTACAGCACCTCTACTTTCCACGAAAAGTCGTTTGCTGCAAAGACAAAGAGGTGGCTCGAGAG ATATTCGTATACAAAGAACGGACTTCTTATTCTTGTTATTATCGGCTCTTCCATGTTGATCGGAGATGGGGTTGTCATACCTTGCATTTCAGTTGTGTCA GCTCTTAATGGAATCAAGCTAAGTCATCATCATCGGATGAGTCAGGAAGTCACCATGGGATTCTCGGTTGTCATATTAGTAGCTTTGTTTTGGTTGCAAC GGTTTGGGACAGAGAAAGTTAGCTGGCTGTTTGCACCAATCCTACTGGTTTGGTTCCTTTCGATTGGAGGAATTGGCATATTCAACATCGTGAAGTATGG TACCCAAGCCTTGAAAGCATTTTCGCCTGTGTATATGTATCGCGCTTTTAATGGGAACCATAAGGATGCTTGGCTATCTCTTGGAGGTGTCATGCTTAGT ATAGCTGGATCGGAGGCTCTCTTTGCTGATATATCCAACTTTTCAGTCTCAGCCATCCAAATTGCTTTCGTTGTTGTGGTATTTCCATGTCTTCTACTGT CGTATTCGGGCCAGGCAGCATATCTTATGAAACACTCGGATCGCGTAGGTGATGCATTTTATAGTTCCATTCCAGATAGCGTGTACTGGGCTATGACGGT TATTGCAACAGCTGCTGCTATTGTTGCTTGTACTGCAGTAGTGGTAGTCACCCTAGTGACGACATTGTTGGTGACCTTGATCATGATACTAGTCTGGAGG TGCCATTGGATATTTGTTCTCCTATTTGCAGCTTTCTTCTTCCTGATAGAAGGAACTTACTTCTGTTCCATAATACTCAAAGTCCAACAAGGCGGTTGGG TCCCTCTAGTCATAGCAGCATGCTGTTTTGTAGCCATGTACGGGTGGCACTACGGGAGGCAGAAGTGCTACGAGTTCGAGATCCACGGTAAAGTATCGAT GGCATGGCTAGTCGGCTTAGGACCGAGCCTGGGACTCGTTCGAGTCCCAGGCATCGGCCTAGTGTACACGAAACTCGTGAGCGGAGTGCCACACATCTTC TCCCACTTCATCACCAACTTGCCTGCTATCCACTCCGTTGTAATCTTCATCTGCATCAAGTACCTCCCGGTATGCACAGTCCCGCAGGAGGAAAGATTCC TCGTCAAGAGAATCGGCCCCAAGGACTTCCACATGTTCCGTTGCGTGGCGAGGTACGGGTACAAGGACCTCCACAAGAAAGACGATGACTTCGAGAGCAA GCTATTCGAAAGCATCTTCAGATTCGTCAGGCTTGATTCGATGATGGACATGGAATACTCGGATGATGACTACAGCTTCGATGAGAACGATTTCAACGGT ACCGATGGGGATACAACGGTAGACATGCCTCGAACGCAGGAGGGGGAGATATCGGTAAACAACAACAACAACAACAACAACAATAACAACGAGATCCGGG GAAGGAATTTCGAGCCGGACGAGTTGGAGTTGTTGAGGAATTGCAGGGGAGCAGGGGTGGTGCATATACTAGGGAATACATTGGTGGCAGCAAGGGAGGA TTCAGGGTGGAGAAAGAGAGTAGCCATTGATTATGTATATGCTTTGCTTAGGAAGCTCTCAAGGGAGAACAGTGTGTTGTTTAATATCCCTAGAGAGAGT TCTTTGAATGTTGGACAGGTTATCACTGTCTAG
AA sequence Show only first row Show all	>Lus10036222 pacid=23169322 polypeptide=Lus10036222 locus=Lus10036222.g ID=Lus10036222.BGIv1.0 annot-version=v1.0 MAANGDEAANKNGRLWALDQQFDQPMDVEADCIKPQNDESKPSTFVLLRLAFQSLGIVYGDLGTSPLYVFYNTFPNGIEDPEDVVGALSFIIYSLALIPL VKYLFIVSRATDNGQGGTFALYSLLCRHAKIRTIPNQDHTDERLRTYSTSTFHEKSFAAKTKRWLERYSYTKNGLLILVIIGSSMLIGDGVVIPCISVVS ALNGIKLSHHHRMSQEVTMGFSVVILVALFWLQRFGTEKVSWLFAPILLVWFLSIGGIGIFNIVKYGTQALKAFSPVYMYRAFNGNHKDAWLSLGGVMLS IAGSEALFADISNFSVSAIQIAFVVVVFPCLLLSYSGQAAYLMKHSDRVGDAFYSSIPDSVYWAMTVIATAAAIVACTAVVVVTLVTTLLVTLIMILVWR CHWIFVLLFAAFFFLIEGTYFCSIILKVQQGGWVPLVIAACCFVAMYGWHYGRQKCYEFEIHGKVSMAWLVGLGPSLGLVRVPGIGLVYTKLVSGVPHIF SHFITNLPAIHSVVIFICIKYLPVCTVPQEERFLVKRIGPKDFHMFRCVARYGYKDLHKKDDDFESKLFESIFRFVRLDSMMDMEYSDDDYSFDENDFNG TDGDTTVDMPRTQEGEISVNNNNNNNNNNNEIRGRNFEPDELELLRNCRGAGVVHILGNTLVAAREDSGWRKRVAIDYVYALLRKLSRENSVLFNIPRES SLNVGQVITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036222 [exp]	0	1
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	10.4	0.8811
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	11.6	0.8804
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	11.6	0.8705
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	14.7	0.8575
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	16.4	0.8597
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	17.3	0.8565
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	18.5	0.8736
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	21.8	0.8752
AT2G45320			unknown protein		Lus10000786 [exp]	24.1	0.8670
AT5G06260			TLD-domain containing nucleola...		Lus10016984 [exp]	26.1	0.8414

Compare expression of checked genes

Lus10036222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.