Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25060 109 / 1e-30 AtENODL14 early nodulin-like protein 14 (.1) AT5G25090 103 / 3e-28 AtENODL13 early nodulin-like protein 13 (.1) AT4G31840 102 / 6e-28 AtENODL15 early nodulin-like protein 15 (.1) AT3G20570 102 / 1e-27 AtENODL9 early nodulin-like protein 9 (.1) AT5G57920 99 / 2e-26 AtENODL10 early nodulin-like protein 10 (.1) AT4G30590 92 / 7e-24 AtENODL12 early nodulin-like protein 12 (.1) AT2G23990 86 / 3e-21 AtENODL11 early nodulin-like protein 11 (.1.2) AT4G27520 83 / 3e-19 AtENODL2 early nodulin-like protein 2 (.1) AT4G28365 81 / 3e-19 AtENODL3 early nodulin-like protein 3 (.1) AT4G32490 81 / 4e-19 AtENODL4 early nodulin-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022160 [exp] 177 / 5e-58 AT2G25060 76 / 5e-18 early nodulin-like protein 14 (.1) Lus10019955 [exp] 139 / 3e-42 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10026880 [exp] 112 / 2e-31 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 111 / 4e-31 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10011158 [exp] 89 / 3e-22 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 88 / 6e-22 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10018617 [exp] 83 / 5e-20 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 83 / 5e-20 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10032111 [exp] 77 / 3e-18 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264600 [exp] 125 / 4e-37 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 120 / 7e-35 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 115 / 7e-33 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.017G011200 [exp] 83 / 6e-20 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.011G135400 [exp] 81 / 4e-19 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 81 / 1e-18 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 78 / 2e-17 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.001G419200 [exp] 75 / 8e-17 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.001G187700 [exp] 71 / 1e-15 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 71 / 2e-15 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10036257 pacid=23169397 polypeptide=Lus10036257 locus=Lus10036257.g ID=Lus10036257.BGIv1.0 annot-version=v1.0 ATGGCTCGTTTGATTTTCTTTGTATCTCTCATTTCCTTGTCGCTGGCAGCTTCTGAAGCAAGAGAGTTCATCGTCGGAGGAAAAGAGAGCAACACTTTTT GGAAGGTTCCTAACGGCGATCGGACCAATCTTAATTACTGGGCAGAGCAAAACAGATTCTCAAAAGGAGATGTTCTCGTATGGAAAACCGTGGATATAAA GGATACAGTGCTGGAAGTGAACAAGAAAGCGTACGACAGCTGCAACACGACGTCGGATTCGGTTAAAACGGTGGACGTGGAGTTCACTTTGGACCACTCG GGACCGTTCTACTTCATCAGCGGATGCAAGAGTCACTGCAACAAAGGGCTGAAGCTGGAAGTGGTTGTTCTCAGTGACCATCACCGAGAATTACTTCTGG TTCCGGCGCCGGCGCCAAGTGGATCGTACAAGGTTAGAGCTTTCGGATCGGTGGTCACGGGGGCGGCGTTCCTGTCTTTGTTGCTTCTGTGA
AA sequence Show only first row Show all	>Lus10036257 pacid=23169397 polypeptide=Lus10036257 locus=Lus10036257.g ID=Lus10036257.BGIv1.0 annot-version=v1.0 MARLIFFVSLISLSLAASEAREFIVGGKESNTFWKVPNGDRTNLNYWAEQNRFSKGDVLVWKTVDIKDTVLEVNKKAYDSCNTTSDSVKTVDVEFTLDHS GPFYFISGCKSHCNKGLKLEVVVLSDHHRELLLVPAPAPSGSYKVRAFGSVVTGAAFLSLLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Lus10036257 [exp]	0	1

Compare expression of checked genes

Lus10036257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.