Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24220 382 / 3e-132 ATPUP5 purine permease 5 (.1.2) AT4G18220 139 / 3e-38 Drug/metabolite transporter superfamily protein (.1) AT2G33750 135 / 1e-36 ATPUP2 purine permease 2 (.1.2) AT1G28220 135 / 2e-36 ATPUP3 purine permease 3 (.1) AT4G18210 126 / 9e-33 ATPUP10 purine permease 10 (.1) AT1G44750 125 / 1e-32 ATPUP11 purine permease 11 (.1.2.3) AT1G28230 124 / 4e-32 ATPUP1, PUP1 purine permease 1 (.1) AT4G18197 113 / 4e-28 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18205 112 / 6e-28 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G08700 102 / 2e-24 ATPUP13 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022148 [exp] 305 / 2e-103 AT2G24220 204 / 4e-64 purine permease 5 (.1.2) Lus10020950 [exp] 157 / 2e-44 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 153 / 2e-43 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 146 / 1e-40 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10008212 [exp] 140 / 6e-38 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10008713 [exp] 138 / 3e-37 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10020939 [exp] 137 / 4e-37 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008714 [exp] 136 / 9e-37 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10020416 [exp] 135 / 2e-36 AT1G28220 341 / 2e-116 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G184900 [exp] 439 / 1e-154 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.005G160300 [exp] 148 / 2e-41 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.001G147600 [exp] 137 / 7e-37 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 130 / 1e-34 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G352200 [exp] 128 / 1e-33 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G352100 [exp] 126 / 6e-33 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.002G099600 [exp] 122 / 2e-31 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.003G156900 [exp] 97 / 2e-22 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 78 / 1e-15 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10036272 pacid=23169371 polypeptide=Lus10036272 locus=Lus10036272.g ID=Lus10036272.BGIv1.0 annot-version=v1.0 ATGGAAGATGAATCATCATCATCCAAGCCTACTAGGATGACTTGGAGAGAGAAACTTGCCCAATTCCATGCGGAGTTATGGGTATCATTCCATAACAAAC CAATCTCACATTGGATTCTTCTAGCTTTGAGCAGTATAGCAATACTTGTTGCTTTCCCGGCATCAAGTCTCTTATCTCGTGTCTACTACTCCAATGGAGG CACTAGCAAGTGGATCATCTCATGGGTAGCAGTTGCCGGATGGCCGTTATCGGTCATGATACTTGTTCCAACTTATTACATCTGTGAGAAAACTCCAACT CCGCTGAACATCAAACTCGTAGCATCCTACATTGCCCTGGGTTTCCTTAGTGCAGCTGATAACCTTATGTATGCATATGCGTACGCGTACCTCCCAGCAT CAACCTCTTCTCTATTGGCATCATCGTCACTCATTTTCTCCACATTATGTGGCTACTTCATCGTGAACAACAAGCTGAATGCTTCAATGATAAATGCCAT CGTGCTAATCACAGCTGCAATGACGATAATAGCCCTGGATTCTAGCTCAGACAGGTACGGAGACGTCACTAACAGGCAATACATCATGGGTTTCACATGG GACATCTTAGCGTCAGCTCTCCATGGCCTGATATTTGCCCTCTCGGAGCTACTCTTTGTCAAGCTCTTGGGAAGGAGATCGTTCCACGTCGTGCTAGAGC AGCAGGTGATGGTATCTTTCTTTGGCTTCTTGATCACCCTGGTTGGTGTCGTCTTGAACCAGGATTTCCAAAGGATGAAATCTGAAGCTACGAGTTTCAA AGGTGGGGAGTCTGCGTACGTGCTGGTTCTGGTGTTTGGAGCGATTACTTTTCAGTTGGGGATATTGGGAGCGACGGGTGTGCTGTTCCTGTCGAACACG GTGCTTGCTGGTGTACTGAATGCGATTCGGGTGCCATTGACGAGCATTGCTGCTGTAATATTGCTGCTTGATCCGATGAGCGGGTTCAAGATTCTGTCTT TGGTGATTACATTTTGGGGGTTCTGTTCTTACATCTATGGCAGTCTCTCATTCTCTCCCAGGAAAAAAGAAGGAGCTCTAGTATGA
AA sequence Show only first row Show all	>Lus10036272 pacid=23169371 polypeptide=Lus10036272 locus=Lus10036272.g ID=Lus10036272.BGIv1.0 annot-version=v1.0 MEDESSSSKPTRMTWREKLAQFHAELWVSFHNKPISHWILLALSSIAILVAFPASSLLSRVYYSNGGTSKWIISWVAVAGWPLSVMILVPTYYICEKTPT PLNIKLVASYIALGFLSAADNLMYAYAYAYLPASTSSLLASSSLIFSTLCGYFIVNNKLNASMINAIVLITAAMTIIALDSSSDRYGDVTNRQYIMGFTW DILASALHGLIFALSELLFVKLLGRRSFHVVLEQQVMVSFFGFLITLVGVVLNQDFQRMKSEATSFKGGESAYVLVLVFGAITFQLGILGATGVLFLSNT VLAGVLNAIRVPLTSIAAVILLLDPMSGFKILSLVITFWGFCSYIYGSLSFSPRKKEGALV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	0	1
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	1.4	0.9026
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	2.6	0.8658
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	2.8	0.8716
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10004623 [exp]	3.5	0.8676
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	3.5	0.8808
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	3.9	0.8691
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	4.9	0.8732
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	8.7	0.8501
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	9.6	0.8243
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	9.9	0.8518

Compare expression of checked genes

Lus10036272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.