Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50680 268 / 1e-88 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G51120 259 / 9e-85 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G13260 175 / 3e-52 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 169 / 4e-50 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G25560 166 / 2e-48 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 163 / 1e-47 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT2G36080 100 / 8e-25 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT3G61970 97 / 5e-23 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 96 / 2e-22 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 95 / 2e-22 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021848 [exp] 208 / 2e-66 AT1G50680 109 / 2e-28 AP2/B3 transcription factor family protein (.1) Lus10021707 [exp] 169 / 1e-49 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10041487 [exp] 160 / 2e-46 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026212 [exp] 127 / 3e-35 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10034276 [exp] 102 / 8e-26 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10021326 [exp] 93 / 1e-21 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 90 / 7e-20 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10012572 [exp] 61 / 4e-10 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 59 / 9e-10 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109201 [exp] 336 / 4e-115 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 323 / 7e-110 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 276 / 4e-91 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 167 / 5e-49 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.010G129200 [exp] 164 / 2e-47 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 98 / 7e-23 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 97 / 1e-22 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 96 / 5e-22 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.006G208100 [exp] 95 / 6e-22 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.016G074500 [exp] 95 / 6e-22 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10036282 pacid=23169312 polypeptide=Lus10036282 locus=Lus10036282.g ID=Lus10036282.BGIv1.0 annot-version=v1.0 ATGTTCCAGCAAGACCCAAGGTGTATCATCTCATGTAGGGAACTAGCTGCATTCAACGAAGTTTCTGATGCAAACAGTAGAACTCAACGCCTTGATGATC CATCATCCCGTTCAACAGCAAACAAGCGACCACGTTATACTTCTAGCGCATTTGCTTCAAAGTTCAAAGGCGTCGTGCCACAGCAGAACGGACACTGGGG ATGCCAAATCTATGCCAACCACCAGAGGATATGGCTGGGGACCTTCAAATCCGAGAAGGAGGCAGCAATGGCTTACGATAGTGCTGCATTGAAGCTTCGA AGCAGCGGAGACACTTGTAGGAACTTCCCTGTTACGCCCGCCACCAGCCAAGAGCCAAACTTCCAGTGTAACTACAGCACGGAAGCTGTCCTGAACATGA TAAAGGACGGCACTTACCAATCAAGGTTTGGGGAATTCATTGCCCAGACAGTCGGGACCGAGCTCAGCCTCAACTTTCTGAGGCCAAGAACCGATAATGG GGGCCTGTTATGCAAGGAGTTGTTCCACAAAGAGCTTACCCCGAGCGACGTCAGCAAGCTGAACAGGCTTGTCATCCCGAAGAGATCCGCAACTATGCAC TTCCCTAAAGTTCCTGAAACCGAGGGCGTGGAAGAGGACAACATGCAGCTGAGCTTTTATGATAGGTCGTTGAAGACGAGGTGGAGTTTCAGGTACTGTT ACTGGAAGAGCAGCCAGAGTTTCGTGTTCACAAGAGGGTGGAACCGGTTTGTGAGGGAGAACAATCTCAAGGCTAAGGACACCATAAGTTTCCATGAGTG CGAGCGACACCATGGTGCAACAAGCGAGAGATTCTACATGATTGACGTGAACAACAGGCAGCCGCAACTGCAACTAGGTTGTTACCCTGGAATGGTGACT GAGCTGCAACAAGAAACCCAGATGAAGAGTAAGGGGTTTATGCTTTTTGGTGTGAGGATAGTTTGA
AA sequence Show only first row Show all	>Lus10036282 pacid=23169312 polypeptide=Lus10036282 locus=Lus10036282.g ID=Lus10036282.BGIv1.0 annot-version=v1.0 MFQQDPRCIISCRELAAFNEVSDANSRTQRLDDPSSRSTANKRPRYTSSAFASKFKGVVPQQNGHWGCQIYANHQRIWLGTFKSEKEAAMAYDSAALKLR SSGDTCRNFPVTPATSQEPNFQCNYSTEAVLNMIKDGTYQSRFGEFIAQTVGTELSLNFLRPRTDNGGLLCKELFHKELTPSDVSKLNRLVIPKRSATMH FPKVPETEGVEEDNMQLSFYDRSLKTRWSFRYCYWKSSQSFVFTRGWNRFVRENNLKAKDTISFHECERHHGATSERFYMIDVNNRQPQLQLGCYPGMVT ELQQETQMKSKGFMLFGVRIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	0	1
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	2.6	0.9108
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	5.1	0.8793
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	8.8	0.8604
					Lus10013985 [exp]	9.3	0.8452
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	13.1	0.9000
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	14.5	0.8714
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	16.2	0.8171
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	20.0	0.8884
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	26.8	0.8949
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	27.0	0.8863

Compare expression of checked genes

Lus10036282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.