Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 289 / 6e-90 GARP ARR12 response regulator 12 (.1) AT4G16110 268 / 2e-81 GARP ARR2 response regulator 2 (.1) AT3G16857 266 / 8e-81 GARP ARR1 response regulator 1 (.1.2) AT4G31920 246 / 4e-74 GARP ARR10 response regulator 10 (.1) AT5G58080 225 / 1e-65 GARP ARR18 response regulator 18 (.1) AT2G01760 217 / 5e-65 GARP ARR14 response regulator 14 (.1) AT1G67710 216 / 2e-63 GARP ARR11 response regulator 11 (.1) AT5G49240 145 / 3e-39 GARP APRR4 pseudo-response regulator 4 (.1) AT5G07210 128 / 3e-31 GARP ARR21 response regulator 21 (.1) AT3G62670 122 / 1e-30 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019058 [exp] 763 / 0 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10005340 [exp] 269 / 6e-82 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 268 / 1e-81 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10037719 [exp] 248 / 1e-73 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 248 / 2e-73 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10011389 [exp] 238 / 1e-72 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 238 / 2e-72 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10025044 [exp] 182 / 2e-51 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 137 / 2e-34 AT4G16110 169 / 4e-45 response regulator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111300 [exp] 292 / 4e-90 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 290 / 2e-89 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G135500 [exp] 265 / 3e-80 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 263 / 2e-79 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G001000 [exp] 246 / 3e-73 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 245 / 1e-72 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G262100 [exp] 242 / 3e-71 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.010G053100 [exp] 237 / 1e-70 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.018G021300 [exp] 233 / 5e-68 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.008G181000 [exp] 223 / 3e-65 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036303 pacid=23169450 polypeptide=Lus10036303 locus=Lus10036303.g ID=Lus10036303.BGIv1.0 annot-version=v1.0 ATGGCTACTGCGGATTCCAGTGATTCTGGTTCGTTTGGCGGTGATTTTATACCGTCTGAATTGCGGGTTTTGGTCGTTGATGACGACATGGTTTGCCTTA GGTATCTCGAAAGTCTCCTCCGCAAATGCCATTACCAAGTAACGGGGACGAGTCAGGCGCTTGGAGCTCTGCAGATACTGAGGGAGAAGAAGGGCGAGTT CGACTTGGTGATGAGCGATGTGAATATGCCGGACATGGATGGGTTCAAGCTTCTTGAGCATGTTGAATTCGAAATGGATATTCCTGTGATCATGGTGTCT TCTCACAGTGAGAAGGAGCTAGTGTACAAAGGAGTAACCCATGGAGCAGTGGATTACTTACTCAAACCGGTTAGAATGGAAGAGGTCAAGAACATTTGGC AACATGTAGTAAGGAAGAGGAAGATGAGTGCAAAGAACAAGAAGAGCAAATCATCGTCAAGTCCAGAGCAGGGTAATCATCAGGATGATAACAACAGTGG ACCACCTAATAACCAGGGTACTAGTGCCCCTTCCAGTGGTAACTCTGATCCGAATGGTGGGAAGTCGAGTAAGAAGAGGAAAGACAACGAGGGAGATGAA GAAGATGGCGGACACAACGTCAGCGACGAGAATGGTAGAGAGGAGAATGAGGAATCGGGGACTCAGAAGAAGGCTCGGGTAGTTTGGAATCCTCAGCTGC ATAAGAAGTTTGTTGAGGCTGTTTATCAAATTGGTTTTGACAAGGCTGTTCCAAAGAAGATCCTTGAGATGATGGATGTTGAAGGGCTTACTAGGGAAAA TGTAGCAAGTCATCTTCAGAAATTCAGGATGTACCTGAAAAAAGCGGGGAACATAGGAAGGCTGCCAGAAGTCGATGAACTACGATACGTACCAAGGTTT CCGGGAGGATATCAACCTGCGGGAAGATACAACTCTCCCTCTAATTTAATTCCAAGAAGACTATCTACTTCACTACCATCATCTGGAATAATAATTCAAC AACAGACTAATTTGCTGAATAACATTGCTGAACAGATGCAGCAGCACCAGCAACCATCATCTGTCTTTCCCAGTGGAGAATCTTCAATGCTGTTTCCGCC CAAGCACATCTCATTCAATAACTCCACAGGGTTTCTTGGATCATCATCTAGCAGCAATATTCGAGTAGCACCTAGTAGCTCTCCAAACTCTATGATGATG CTGCAACCAGCTCCTCCTCATAACATAATGGCTGGAGGAGGAGGAGCCTTTGGAGGTCAACAACGGCCTTTGAATCAGCCATCACCATTTGGGCTGATGC ATCATGGATCCTCCTCCAACTTTGATGCAGTCCAGTTGCCAAAGTTGCCACCAACTTCTTTCGATTTCTCTACTAGTAACCTCATGGGGGGGAATGTGAT TGACGATTACAGTCCAAGCATCTTAAACAGTTTAAATAACCCCTTTGGAGCAATGAACTCATTAACTGGTTCCAGCAATGGTGTAACTAGTGCTACTTCT GCTTCTGGTCCTTTGAATATGTCCGTGTTTGATAATGCTATTGCAGGTGGAGTTACTCAGACTCATAATGGGTGTAACAATAATAACTATGATTATTTGG ATGATATGATGACTGCATTGATCAAAAGGGAGCAAAATGAAGGATTGATCATTGATCCAGACTTGGGATTGGATGCTTACCAGATGGGACCATCTCCTCA TTTATGA
AA sequence Show only first row Show all	>Lus10036303 pacid=23169450 polypeptide=Lus10036303 locus=Lus10036303.g ID=Lus10036303.BGIv1.0 annot-version=v1.0 MATADSSDSGSFGGDFIPSELRVLVVDDDMVCLRYLESLLRKCHYQVTGTSQALGALQILREKKGEFDLVMSDVNMPDMDGFKLLEHVEFEMDIPVIMVS SHSEKELVYKGVTHGAVDYLLKPVRMEEVKNIWQHVVRKRKMSAKNKKSKSSSSPEQGNHQDDNNSGPPNNQGTSAPSSGNSDPNGGKSSKKRKDNEGDE EDGGHNVSDENGREENEESGTQKKARVVWNPQLHKKFVEAVYQIGFDKAVPKKILEMMDVEGLTRENVASHLQKFRMYLKKAGNIGRLPEVDELRYVPRF PGGYQPAGRYNSPSNLIPRRLSTSLPSSGIIIQQQTNLLNNIAEQMQQHQQPSSVFPSGESSMLFPPKHISFNNSTGFLGSSSSSNIRVAPSSSPNSMMM LQPAPPHNIMAGGGGAFGGQQRPLNQPSPFGLMHHGSSSNFDAVQLPKLPPTSFDFSTSNLMGGNVIDDYSPSILNSLNNPFGAMNSLTGSSNGVTSATS ASGPLNMSVFDNAIAGGVTQTHNGCNNNNYDYLDDMMTALIKREQNEGLIIDPDLGLDAYQMGPSPHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	0	1
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	3.2	0.8326
					Lus10041373 [exp]	4.2	0.8251
					Lus10022997 [exp]	8.4	0.7746
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004547 [exp]	10.8	0.7591
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	11.3	0.7774
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10014933 [exp]	13.0	0.7429
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	14.8	0.7576
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10034287 [exp]	18.3	0.7388
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	18.4	0.7387
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10022657 [exp]	18.7	0.7115

Compare expression of checked genes

Lus10036303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.