Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47460 221 / 3e-69 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT5G49330 218 / 3e-68 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT3G62610 212 / 7e-66 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT3G23250 186 / 1e-56 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G22640 182 / 2e-55 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G09460 181 / 2e-55 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G35515 178 / 2e-54 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G21440 182 / 4e-54 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G38620 179 / 8e-54 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 177 / 2e-53 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010273 [exp] 552 / 0 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10016855 [exp] 212 / 3e-66 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10001458 [exp] 207 / 2e-64 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10002435 [exp] 204 / 4e-63 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 200 / 9e-62 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10033438 [exp] 183 / 4e-55 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10016948 [exp] 182 / 4e-55 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 182 / 6e-55 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 182 / 6e-55 AT4G09460 300 / 5e-103 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198100 [exp] 227 / 5e-71 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.010G141000 [exp] 222 / 1e-69 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 216 / 2e-66 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 186 / 6e-57 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144200 [exp] 186 / 8e-57 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.001G086700 [exp] 184 / 4e-56 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144300 [exp] 184 / 5e-56 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.002G173900 [exp] 184 / 1e-55 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.T011400 [exp] 183 / 4e-55 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 183 / 4e-55 AT4G38620 257 / 5e-85 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036336 pacid=23174660 polypeptide=Lus10036336 locus=Lus10036336.g ID=Lus10036336.BGIv1.0 annot-version=v1.0 ATGGGAAGGGCGCCGTGTTGCGAAAAGATCGGACTCAAGAGAGGCCGATGGACCTCCGAAGAAGACCAAATCCTCACCAAATACATCCTCGACAATGGCG AAGGATCTTGGAGGTGGCTCCCCAAAAACGCTGGGTTGAAGAGGTGCGGAAAGAGCTGCAGGCTGAGGTGGATAAACTACCTGAGAGGCGACCTCAAGAG AGGCAACATTTCTGATGAAGAGGATGACGTCATCGTCAAGTTGCAGTCTTCTCTTGGCAACAGATGGTCGTTAATAGCAAGCCATTTACCTGGAAGAACA GACAATGAAATAAAAAACTACTGGAACTCTCATTTGAGCAGGAAAGTCCACAGCTTTAGACGGCTAGTTGGCAACGAACCCAGGTTGAAACTAATTGTGG ACACGTCATCGAAGGTCAGGACAGTGGGCGATGGATCAAACAGCAAACCGTTGAAATCCTTGAGTACCAAAAAGGGGAAGACCAAAAAACTGGTGAGCAA TAAGGGGAAAATCCACAACAAGGTGGTGGTGGCGAACAGTGGAAACGACACACTTCCGTCGTTAGAGAATGTACCGCCTAGCGACCAGAATATTAGGGAC CGGAATGCCAAGGAGAAGCAAGGCGTGACGCTGAGTGCAACGGCACCGTTCAGTGGCATCAGCGATGATGGTTCTATCTATGACGTGGAGTTGGATTTTC TCGATGGGCTTATGGACAGCGAGATAGCAAATGGGCCTTTCGCGTTAAATGAGGAAGGACAAAGTAGTGTTGGCCACACTGCCGACACAATAATGGGCCA AGGCCACGATGTTGACGACGAGGGTAGTGGGCCCATAAAGAGCTGCGATGATGTGGACACGGATGGTGTAGTCAACATTGGAAGCGTCGAGGGCACTTTG GAGTGCTGCTGGCCGACATGGAGCTGGGAGGACGTGGTCGTGGCGGGACATGAACCGTTGGATGATGTTGTGAAGTTTAGTAACGGTGACGATGATAGCT TGGATCTTTGCAAGTGGTCGTGGGATTGTGAGGAAGTAGCTGGGAGTAGTCAAGAAATGGACAATGACTTGGTGGCTTGGCTTCTTTCTTAA
AA sequence Show only first row Show all	>Lus10036336 pacid=23174660 polypeptide=Lus10036336 locus=Lus10036336.g ID=Lus10036336.BGIv1.0 annot-version=v1.0 MGRAPCCEKIGLKRGRWTSEEDQILTKYILDNGEGSWRWLPKNAGLKRCGKSCRLRWINYLRGDLKRGNISDEEDDVIVKLQSSLGNRWSLIASHLPGRT DNEIKNYWNSHLSRKVHSFRRLVGNEPRLKLIVDTSSKVRTVGDGSNSKPLKSLSTKKGKTKKLVSNKGKIHNKVVVANSGNDTLPSLENVPPSDQNIRD RNAKEKQGVTLSATAPFSGISDDGSIYDVELDFLDGLMDSEIANGPFALNEEGQSSVGHTADTIMGQGHDVDDEGSGPIKSCDDVDTDGVVNIGSVEGTL ECCWPTWSWEDVVVAGHEPLDDVVKFSNGDDDSLDLCKWSWDCEEVAGSSQEMDNDLVAWLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036336 [exp]	0	1
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10037711 [exp]	6.2	0.6874
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	15.6	0.6814
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10000737 [exp]	31.4	0.6720
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	41.2	0.6623
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10014774 [exp]	57.6	0.5983
AT3G19540			Protein of unknown function (D...		Lus10026605 [exp]	68.1	0.6047
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	102.7	0.5426
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	210.6	0.5379

Compare expression of checked genes

Lus10036336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.