Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02480 1320 / 0 AAA-type ATPase family protein (.1) AT1G02890 1278 / 0 AAA-type ATPase family protein (.1.2) AT4G24860 699 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 699 / 0 AAA-type ATPase family protein (.1) AT1G64110 474 / 2e-150 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 462 / 8e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 459 / 7e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 426 / 7e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 419 / 3e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27680 285 / 8e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010282 [exp] 2234 / 0 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 493 / 1e-155 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 483 / 2e-151 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 476 / 3e-151 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 445 / 2e-139 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 442 / 1e-138 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028752 [exp] 416 / 8e-129 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 414 / 5e-128 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10013429 [exp] 408 / 6e-123 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205900 [exp] 1496 / 0 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.014G131000 [exp] 1494 / 0 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 1123 / 0 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 1078 / 0 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.001G097600 [exp] 468 / 2e-148 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 461 / 8e-146 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 451 / 4e-142 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093300 [exp] 453 / 1e-140 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 447 / 2e-140 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G069800 [exp] 411 / 5e-125 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10036347 pacid=23174634 polypeptide=Lus10036347 locus=Lus10036347.g ID=Lus10036347.BGIv1.0 annot-version=v1.0 ATGGTGGAGACTCGCCGCAGCTCTTCCGCCTCCAAGCGCCCAATTCATTCCTCCCCTCCTCCACCATCCAAACGATCCAAGTCGGCGGCGGCTGTTGCTG CGGCGGCGGCGGAGGCTTCTTCATCGACGAACGATGACGCACTGGTGTCTGTGCCGGTTGAGACCCTAGGCCTGGCTAAGGATTCTGACACTGTTGTTGT CCCTCCGGAGCTGCAATCCTCTGATCCGCAGGTCACTACTCCTGCTTTAAAAGATAGTGCTGCAGCAGCTGCTAAATCCCCTGATGCGGATGTTGTTGAT GTGGAAGGTGAGGATTTGATCTGCCCGCCGCCTCAAGGTGGAGCTGCAGTGGAGATGGAGAGAGCCAAGTTTGTGAGTGGACCGGCTACAACTACCCGGT CTAAGAAGGGGCAAAAGAAGTCGGAGAAGCTGGATCCTCAAGTTGCATGGGCAAAGCTTCTTTGCCAGTATTCTAAGTGTGGAGGTGTTGTTGCTGCCAT GTTGGAAGTTGTTGGGGGTAAAGGTACTGTTCATGTCAACAATAAGATTCAGCGGAAAGGCACCCGTGTAATGTTGAATGCAGGAGATGAGTTGGTTTTC AACGCTTCTTTGGAGCATGCTTATATCTTTCAGCAGCGCCCCAATGATACTTTGGGAGGTCGAGGAATAGCTGCATTGAGCATTTTAGAAGCTCCGGGTG CTGCAGGCAAAGGGATCCCTCTGGAGGCGAGATCTGGAGATACGTCAGCCTTCGCAGGCGCATCAATATTGGCATCTTTGTCGAATTTTCGCAAAGATTT ATCTCTTCCACCTCCTTCTAAAGCTGTCGAGGACACACAAAAGAAACCTGATAATTCTATTCTATCCCCTCTCAGTGTAGTGCCCGGTGATTGTATTCCT GAAGTTGGCATGAAGGATAACACAAACAATAATGATCAACCTGTGGTTTCCTCAAGGAAGGACAATGCTGTTACATCTGGCAATTGTGCCTCTGAAAGCC CCAATCTTGAACCTCTTCCATTAGACAGTTGCACAGATGCAGAAACTGGGAATAACCCAGCCTCTAATTATGAATTAAGGCCTCTTCTGCAGATGCTTTC TGGTTCTTCTTGTGAACTAGATATAAGTGGAAGCATTTCAAAGATACTTGAAGGACGCAGGGAGTTGCTCAAAGATATTGATCCCTCTGCCGTTTTGCTT TCTTCTGGTAGGCAGGCATACAAAGACAGTCTAGAACAAGGAATCTTAAGTCCTGAGAACATCGAGTTCTCATTTCAAAATTTCCCTTATTACCTTGGTG ATACAACAAAGAAAGTCCTTCTGGGTGCTGCATTTGTTCACTTGAAGTGTAATAACAAAGTAGCTAAATTTGCTTCTGATCTCCCCACTATATCACCTCG AATGCTGTTGTCTGGTCCTGCAGGCTCAGAGATATACCAGGAGAGACTTGTGAAGGCCCTTGCGAAAGAGCTTGGAGCTAGACTACTGGTTGTTGATTCT CTACAATTGCCTGGCGGATCAACCCCCAAAGAAGCTGATAATGTGAAAGAAACTTTTAGACCGGAAAGAGCATTATTTGCCAAAAGAGTAATGCAATCAG CACTACACCATAAGAAACCAGCTTCTAGTGTGGAAGCTGGTATTACAGGTGGATCCGTCATAAGTTCTCACGCGCTGCCGAAGCAGGAAACTTCTACTGC CTCATCTAAACATTCCGCATTTAAAACAGGCATATTAACTTTCCTATGTGATAGAGTGAAGTATGTTGGTTCCTCTTCACCGTCTTCTCTGTCTCCTCTT CAACCTCCATTGAGGGGACCTTCAATTGGGTTACGCGGCAAGGTACTACTTGCTTTTGAAGAAAACGGGTCGTCTAAGATTGGTGTGAGGTTTGATAGGC CCGTCCAAGAAGGAAATGATCTTGGTGGTCTTTGTGAAGAAGAACGTGGTTTCTTTTGTGCTGCCAATTCACTTCGCTTGGATGGCTCTGGAGGTGAAGA GTCTGACAGGCTTGCTGTTAATGAACTCTTCGAGGTTGTTTTAAGTGAAAGCAAAAGTGGTCCATTGATAGTTTTTCTGAAAGACATAGAAAAGTCTGTG GCGGGCAATCCAGATGCATATACTGCCTTGAAAAGCAAGATGGAAAATTTACCAGATAAGGTTATTGTGATTGGATCCCATGCTCAGATGGACAGTCGAA AAGAAAAGTCTCAGCCTGGTGGTCTTCTGTTTACCAAGTTTGGAAGCAACCACACTGCTTTGCTTGATTTTGCATTTCCAGAATACATAATGAAAATTGA TCCTATGATCTCTTCTCGTCAGGATCATTTAGGTAGACTACATGAAAAGAGCAAGGAGACTCCTAAAACAATGAAGCAGCTTTCAAGACTTTTTCCCAAC AAAGTGGCCATTCAGATACCTCAGGATGAAGGATTGCTTTTGGACTGGAAGCAGCAGTTGGATCGTGATATTGAAACTCTCAAAGTACAGACTAATATTG TGACTATTCGTTCAGTCCTTACTCGAGTTGGCCTGCAATGCCCTGATCTCGAGTCCCTGTCCATTAATGACCAGGCCTTGACAAGCGAAAGTGTGGAGAA AATAGTAGGTTGGGCATTAAGCCACCACTTCATGCATTGTTCCTCGACTTCACCGACAGAAGCTAAATTATCAATATCCACAGAAAGTATTAACTATGGA TTGAGTATTCTACATGGTATACTTAATGAAAACAAGAGCTCGAAGAAATCTCTCAAGGATGTCGTCACTGAGAATGAATTTGAGAAGAAACTTCTAGGAG ATGTCATTCCTCCCAACGACATTGGAGTTTCATTTGACGACATTGGTGCCTTGGAAAATGTGAAGGAAACATTAAAGGAGCTCGTCATGCTTCCTCTTCA GAGGCCTGGATTGTTCTGCAAAGGGCAGCTTACTAAGCCTTGCAAGGGGATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACAATGCTGGCGAAGGCT GTGGCAACTGAAGCTGGTGCAAATTTCATCAACATATCGATGTCAAGCATTACATCGAAGTGGTTTGGCGAAGGAGAGAAGTACGTCAAGGCCGTGTTCT CTTTAGCTAGCAAAATTGCTCCTAGTGTTATATTCGTCGACGAGGTGGATAGTATGTTAGGAAGGCGTGAGAATCCTGGAGAACATGAAGCAATGCGTAA AATGAAGAACGAATTCATGGTGAACTGGGACGGTCTGCGTACGAAAGATAAAGAAAGAGTGTTGGTCCTTGCTGCCACAAATCGACCGTTCGATCTTGAT GAAGCTGTTATTCGGAGACTTCCTCGAAGGTTGATGGTAAACTTGCCTGATGCATCAAATAGAGGAAAGATTCTGAAGGTGATCTTAGCTAAAGAGGAAC TGGCAGGAGATGTGGATCTGGAAGCAGTTGCAAGTATGACTGATGGCTATTCCGGAAGTGACTTGAAGAACCTGTGTGTGACTGCAGCTCATTGTCCCAT AAGAGAGATATTGGAGAAAGAGAAGAAGGAAAAAGACGTGGCACTTTCTGAGAAAAGACCTGTGCCTGACTTGTACGGCGGTACAGATGTTCGCCCGATG AAAATGGAGGATTTCAGATATGCTCATGAACAGGTTTGTGCAAGTGTGTCATCTGAGTCGAGTAACATGAGTGAGTTGCTACAATGGAATGATCTGTATG GAGAAGGTGGATCGAGGAAGAAGAAGTCATTAAGCTATTTCATGTAG
AA sequence Show only first row Show all	>Lus10036347 pacid=23174634 polypeptide=Lus10036347 locus=Lus10036347.g ID=Lus10036347.BGIv1.0 annot-version=v1.0 MVETRRSSSASKRPIHSSPPPPSKRSKSAAAVAAAAAEASSSTNDDALVSVPVETLGLAKDSDTVVVPPELQSSDPQVTTPALKDSAAAAAKSPDADVVD VEGEDLICPPPQGGAAVEMERAKFVSGPATTTRSKKGQKKSEKLDPQVAWAKLLCQYSKCGGVVAAMLEVVGGKGTVHVNNKIQRKGTRVMLNAGDELVF NASLEHAYIFQQRPNDTLGGRGIAALSILEAPGAAGKGIPLEARSGDTSAFAGASILASLSNFRKDLSLPPPSKAVEDTQKKPDNSILSPLSVVPGDCIP EVGMKDNTNNNDQPVVSSRKDNAVTSGNCASESPNLEPLPLDSCTDAETGNNPASNYELRPLLQMLSGSSCELDISGSISKILEGRRELLKDIDPSAVLL SSGRQAYKDSLEQGILSPENIEFSFQNFPYYLGDTTKKVLLGAAFVHLKCNNKVAKFASDLPTISPRMLLSGPAGSEIYQERLVKALAKELGARLLVVDS LQLPGGSTPKEADNVKETFRPERALFAKRVMQSALHHKKPASSVEAGITGGSVISSHALPKQETSTASSKHSAFKTGILTFLCDRVKYVGSSSPSSLSPL QPPLRGPSIGLRGKVLLAFEENGSSKIGVRFDRPVQEGNDLGGLCEEERGFFCAANSLRLDGSGGEESDRLAVNELFEVVLSESKSGPLIVFLKDIEKSV AGNPDAYTALKSKMENLPDKVIVIGSHAQMDSRKEKSQPGGLLFTKFGSNHTALLDFAFPEYIMKIDPMISSRQDHLGRLHEKSKETPKTMKQLSRLFPN KVAIQIPQDEGLLLDWKQQLDRDIETLKVQTNIVTIRSVLTRVGLQCPDLESLSINDQALTSESVEKIVGWALSHHFMHCSSTSPTEAKLSISTESINYG LSILHGILNENKSSKKSLKDVVTENEFEKKLLGDVIPPNDIGVSFDDIGALENVKETLKELVMLPLQRPGLFCKGQLTKPCKGILLFGPPGTGKTMLAKA VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD EAVIRRLPRRLMVNLPDASNRGKILKVILAKEELAGDVDLEAVASMTDGYSGSDLKNLCVTAAHCPIREILEKEKKEKDVALSEKRPVPDLYGGTDVRPM KMEDFRYAHEQVCASVSSESSNMSELLQWNDLYGEGGSRKKKSLSYFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	0	1
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	1.0	0.9564
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	2.0	0.8962
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	3.3	0.8560
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	4.5	0.8750
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	4.9	0.8790
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	4.9	0.8552
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	5.2	0.8628
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	5.5	0.8563
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	5.9	0.8728
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	6.9	0.8709

Compare expression of checked genes

Lus10036347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.