Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65550 729 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 617 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 616 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G10540 600 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 584 / 0 Xanthine/uracil permease family protein (.1) AT5G49990 582 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 546 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 514 / 5e-179 Xanthine/uracil permease family protein (.1) AT5G25420 493 / 3e-172 Xanthine/uracil/vitamin C permease (.1) AT2G26510 455 / 1e-155 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014777 [exp] 991 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 638 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 634 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 622 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 612 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 594 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 573 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 570 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 525 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015100 [exp] 703 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.008G146400 [exp] 632 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 627 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 623 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 622 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 582 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 537 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 536 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 523 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 479 / 4e-165 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10036355 pacid=23174549 polypeptide=Lus10036355 locus=Lus10036355.g ID=Lus10036355.BGIv1.0 annot-version=v1.0 ATGGCTCAAGGCAGCAAGAAGCCAGAGGAGTTACCATTGCCACACCCAGTGAAGGAGCAGCTACCTGGAGTTCAGTATTGCATCAACAGCCCTCCTCCAT GGCCTGAAGCACTGGTTCTTGGATTTCAGCACTACCTTTTGACTCTTGGGATGACTGTCTTGATTCCCACCATCATTGTCCCTGAGATGGGAGGTGGAAA TTTTGAGAAAGTCAGAGTGATACAGACACTGCTGTTCGTATCAGGAGCCACCACTCTCTTGGAGACGTTATTAGGGACTCGGCTTCCCTCAATTGCAGCT GCTTCTTTTGCTTATGTTTTGCCCATTACTTCAATCGTCACAGCCGACCGGTTTCAATCCATAGCAAACCCTCATAAGAGGTTTGTGCAAACAATGAGAG CAATCCAGGGCTCTTTGATTCTCACTGGCTGCTTCCAAGTGGTTATGGGGTTCTTGGGTATCTGGAGAAATGCTGTCAGATTTCTTAGTCCTCTTTCCAT TGCTCCTTGTGTAGCCTTCTCTGGCCTAGGACTTTATTATCTTGGTTTTCCTGCGTTGGCAAGATGTGTGGAAATTGGACTTGCACAAGTTATCATAATG GTTTTCATCACTCAGTATCTTCCATACTATGTGAAAGCAAAGAGGCCAATATGCGATCGATTCGGACTGCTTTTCTCAGTCCCCGTCGTATGGTTATTTG CTCAGCTCTTGACATCAAGTGGTGTCTATGAAGGAAAATCTGTTGTCACTCAGTTGAGTTGCCGTACAGATCGGTCTGGACTAGTCACTTCAGCTCCTTG GATATTTATTCCTTATCCATTTCAATGGGGGAACCCAACTTTTAAGGCTGGAGAGACTTTTGCAATGATGGCTGCTTCTTTTGTTTCTCTGTTTGAGTCA ACTGGAACATTCTATGCAACAGCTAGGTATGGCAGTGCCACCCCTGTCCCACCTTCAATTGTTAGCCGTGGCACTGGATGGCTGGGTATTGGAGTCCTGC TAAATGGGGTTTTCGGCAGTCTCGCTGGCTTTACAGCATCAGTTGAAAATGCAGGTTTGTTAGCTTTAACTAAAGTTGGAAGCCGAAGAGTAATCCAAAT ATCAGCAGTATTCATGATTTTCTTCTCAGTGCTCGGAAAATTTGGAGCCTTTCTGGCATCAATACCAATGCCGATCGTAGCTGGCATATACTGCATTCTA TTTTGCTACGTCTCATCAGCAGGGCTTGGCGTTCTTCAATTCTGCAACCTCAACAGTTTCAGAACGAAATTCATTCTGGGTTTCTCCTTCTTCATGGGAA TCTCCATCCCTCAGTACTTCAGAGAGTACTACATTCAACTGGGTTCCACTAATCACTCTAGTTCCACATGGTTTCGCAACGTAGTGGCGATCATCTTCAC GTCGCATGCAGTGGTAGCTACTTTGATCGCCTTGTTCTTGGACCGCACGTTATCTGGAGAACCCGAGGAGATCAAGAGAGACAATGGATTGAAATGGTGG GAGAAGTTCAGTTTATACAGTTCAGACATTAGGAGCGATGAATTCTATGGCTTGCCTTGTTGCTTTAACAACCTCTTCCCTTCCCATTAA
AA sequence Show only first row Show all	>Lus10036355 pacid=23174549 polypeptide=Lus10036355 locus=Lus10036355.g ID=Lus10036355.BGIv1.0 annot-version=v1.0 MAQGSKKPEELPLPHPVKEQLPGVQYCINSPPPWPEALVLGFQHYLLTLGMTVLIPTIIVPEMGGGNFEKVRVIQTLLFVSGATTLLETLLGTRLPSIAA ASFAYVLPITSIVTADRFQSIANPHKRFVQTMRAIQGSLILTGCFQVVMGFLGIWRNAVRFLSPLSIAPCVAFSGLGLYYLGFPALARCVEIGLAQVIIM VFITQYLPYYVKAKRPICDRFGLLFSVPVVWLFAQLLTSSGVYEGKSVVTQLSCRTDRSGLVTSAPWIFIPYPFQWGNPTFKAGETFAMMAASFVSLFES TGTFYATARYGSATPVPPSIVSRGTGWLGIGVLLNGVFGSLAGFTASVENAGLLALTKVGSRRVIQISAVFMIFFSVLGKFGAFLASIPMPIVAGIYCIL FCYVSSAGLGVLQFCNLNSFRTKFILGFSFFMGISIPQYFREYYIQLGSTNHSSSTWFRNVVAIIFTSHAVVATLIALFLDRTLSGEPEEIKRDNGLKWW EKFSLYSSDIRSDEFYGLPCCFNNLFPSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65550			Xanthine/uracil permease famil...		Lus10036355 [exp]	0	1
					Lus10030380 [exp]	1.0	0.9654
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	2.8	0.8933
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	8.5	0.7877
AT3G48950			Pectin lyase-like superfamily ...		Lus10039279 [exp]	36.0	0.7384
AT1G54460			TPX2 (targeting protein for Xk...		Lus10022003 [exp]	39.2	0.7365
					Lus10027457 [exp]	66.6	0.7352
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	220.5	0.7514
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	223.7	0.7190

Compare expression of checked genes

Lus10036355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.