Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 258 / 2e-84 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 242 / 1e-78 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 231 / 2e-74 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 229 / 1e-73 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 214 / 6e-68 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G17300 101 / 6e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 98 / 3e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT2G46830 100 / 8e-23 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 97 / 4e-22 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT1G18330 96 / 4e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007914 [exp] 535 / 0 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 250 / 1e-81 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 249 / 5e-80 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 215 / 3e-66 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 213 / 3e-66 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 204 / 5e-62 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 100 / 2e-24 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10031322 [exp] 100 / 3e-23 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 99 / 7e-23 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089300 [exp] 343 / 4e-117 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 325 / 3e-110 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 273 / 2e-90 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 271 / 1e-89 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 230 / 2e-73 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 218 / 7e-69 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 101 / 1e-23 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.002G180800 [exp] 100 / 6e-23 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.012G038300 [exp] 99 / 6e-23 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 100 / 9e-23 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036392 pacid=23174359 polypeptide=Lus10036392 locus=Lus10036392.g ID=Lus10036392.BGIv1.0 annot-version=v1.0 ATGGTGTCCATGAATCCCAACCCTGCTCCCGGCTTCTTCTTCTTCGATTCCATGGAAAATCCTATCAACTCCTCGATTCTTCCCGCCGGTGTCCGTTCGC TGCCTCCGTCCTACTCCTCTGTTGCCGCGGCAACCGCAGCTGCTGATACGGCCAGCACGTCGGCGAACAACAACACCTTCTCCTTCAGCGAGGATCAGAG CAAGAAGATCCGGAAGCCTTACACGATTACCAAGTCCAGGGAGAGCTGGACGGAACAAGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGATCGT GATTGGAAGAAAATTGAAGCGTTTGTTGGTTCAAAGACTGTGATTCAGATACGTAGCCATGCCCAAAAGTACTTTCTCAAAGTTCAGAAGAGTGGAACAA GTGAGCACGTCCCTCCACCTCGACCGAAACGGAAAGCAGCTCATCCTTACCCGCAAAAGGCGCCTAAAACTGCAGTTCCTGTTGTACACCAAGTGACTGA GGTGTTTCCATCTCCATCTGCTTCAATGGAAAATGGATACGTTTACCAGCAGCCAGACTCATCTTCTGTTCTGGCAACTCCCATGTCTGCTGGAGGAGCT TTATCTTCCTGGAAATATTACCCTCTACCACAAGCCAGTTTGTCGCAAGTGACTCCAGATGAGACTGCCAATGTTGGAACAACAACTGCAAGTAGTAGCA ATGACAGTACAGCCAAGATATGGCGAGGAGATCAAACTAAAGCAGCACGAGTGATGCCAGACTTTGCTCAAGTATATAGCTTCATTGGCAGTGTTTTCGA CCCTAATGCAAGTGGTCACGTTGAAAAACTGAAGCAGATGGATCCATTAAACCTGGAAACTGTGATGCTGTTAATGAGAAACCTGTCCTTCAATTTAACG AGTCCCGAGTTTGAAGATCATAGAAAAGTTCTTGCATCACACGATCCAGCTACGGAGAGAGCAAGTGGTTATGGTAATATCAGGTCGGATAAAACAACTG GGAGCGCAATCCCTGCTGTTTGA
AA sequence Show only first row Show all	>Lus10036392 pacid=23174359 polypeptide=Lus10036392 locus=Lus10036392.g ID=Lus10036392.BGIv1.0 annot-version=v1.0 MVSMNPNPAPGFFFFDSMENPINSSILPAGVRSLPPSYSSVAAATAAADTASTSANNNTFSFSEDQSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDR DWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKTAVPVVHQVTEVFPSPSASMENGYVYQQPDSSSVLATPMSAGGA LSSWKYYPLPQASLSQVTPDETANVGTTTASSSNDSTAKIWRGDQTKAARVMPDFAQVYSFIGSVFDPNASGHVEKLKQMDPLNLETVMLLMRNLSFNLT SPEFEDHRKVLASHDPATERASGYGNIRSDKTTGSAIPAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	0	1
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	1.4	0.8516
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	2.4	0.8464
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	3.2	0.8018
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	8.2	0.8071
AT1G72100			late embryogenesis abundant do...		Lus10037401 [exp]	9.3	0.7233
AT3G12320			unknown protein		Lus10024129 [exp]	9.8	0.7618
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	11.6	0.7923
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	12.0	0.8080
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	12.6	0.7962
AT4G02425			unknown protein		Lus10030370 [exp]	13.0	0.7979

Compare expression of checked genes

Lus10036392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.