Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04760 228 / 1e-75 MYB Duplicated homeodomain-like superfamily protein (.1) AT2G38090 170 / 6e-52 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G08520 169 / 1e-51 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 165 / 5e-50 MYB Homeodomain-like transcriptional regulator (.1) AT3G11280 163 / 1e-49 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G05790 158 / 2e-47 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G10580 151 / 5e-45 MYB Homeodomain-like superfamily protein (.1.2) AT1G49010 150 / 6e-44 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G01200 147 / 3e-43 MYB Duplicated homeodomain-like superfamily protein (.1) AT4G09450 144 / 3e-43 MYB ATMYB6 Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041088 [exp] 417 / 3e-150 AT5G04760 233 / 1e-77 Duplicated homeodomain-like superfamily protein (.1) Lus10040696 [exp] 173 / 7e-53 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 172 / 1e-52 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 166 / 3e-50 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 165 / 9e-50 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 164 / 2e-49 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10014837 [exp] 159 / 9e-48 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 157 / 8e-47 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 143 / 9e-42 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240800 [exp] 234 / 5e-78 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 197 / 1e-63 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1) Potri.008G016400 [exp] 175 / 5e-55 AT5G04760 150 / 2e-45 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 174 / 1e-53 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 173 / 5e-53 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 170 / 5e-52 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 170 / 9e-52 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.005G087700 [exp] 164 / 1e-49 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.010G193000 [exp] 159 / 9e-48 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 159 / 1e-47 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036413 pacid=23174589 polypeptide=Lus10036413 locus=Lus10036413.g ID=Lus10036413.BGIv1.0 annot-version=v1.0 ATGTATCAGGAACCCTACTCCGATCACTGGACTCGCTCCGACGACAAGAAGTTCGAGCAGGCTCTGGTTTTCTTTCCGGAGGATTCCCCAGGTCGCTGGC TCAACATCGCCCACCACATGGGCCGCCCGGTGGCTCAAGTCATGGAGCATTACAACCTTCTGCTACGCGACGTCTATGAAATTGATTCCGGCCGAGTTGA ATTGCCTACTTACCTCGACGACGACGTCGACAATTGGAGGTCTTCCGCTGCAGTAGAGGAGGAGGAGGATTCCGGTCAGATTTCGTTCTCCGGTGGGAAG ACGACGAAACACGGTGAAACTGAGAGGAAGAAAGGGACTCCTTGGACTGAAGCAGAACACAAGTTGTTTCTGATCGGATTGAGTAAGTACGGGAAGGGGG ATTGGAGGAGCATATCAAGGAACATAGTGGTGTCAAGAACACCAACGCAGGTGGCCAGCCATGCCCAGAAGTACTTCCTGAGGCAGAGTTCAGTGAAGAA AGAGAGGAAAAGGTCAAGCATCCACGACATTACCAATGTTGATATGAACGCTCTTTCTCCTTGTTCGTTGCAAGGACAGAATCAGATGCAGCAGCAGCAG CAGGAGGAGGAAATCTCCGCTCTTGCCTCTTCGTACTTGCCTGATCATCACCAGCAAGAAGGCTATTTGATGGGATTTAACAGCTCTGGATTTCCAATGT AA
AA sequence Show only first row Show all	>Lus10036413 pacid=23174589 polypeptide=Lus10036413 locus=Lus10036413.g ID=Lus10036413.BGIv1.0 annot-version=v1.0 MYQEPYSDHWTRSDDKKFEQALVFFPEDSPGRWLNIAHHMGRPVAQVMEHYNLLLRDVYEIDSGRVELPTYLDDDVDNWRSSAAVEEEEDSGQISFSGGK TTKHGETERKKGTPWTEAEHKLFLIGLSKYGKGDWRSISRNIVVSRTPTQVASHAQKYFLRQSSVKKERKRSSIHDITNVDMNALSPCSLQGQNQMQQQQ QEEEISALASSYLPDHHQQEGYLMGFNSSGFPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	0	1
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	1.0	0.9766
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	1.4	0.9763
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	1.7	0.9686
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	2.4	0.9538
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	4.0	0.9604
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	5.5	0.9224
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	6.3	0.9556
AT2G27480			Calcium-binding EF-hand family...		Lus10019545 [exp]	7.5	0.9229
AT2G32190			unknown protein		Lus10039015 [exp]	7.5	0.9384
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	8.3	0.9253

Compare expression of checked genes

Lus10036413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.