Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22150 983 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 953 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G08620 916 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT3G51895 686 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT3G15990 650 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 640 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G10180 634 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT4G02700 627 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G77990 594 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT5G19600 545 / 0 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041111 [exp] 1282 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 1094 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 666 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 658 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 644 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10025766 [exp] 643 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10016806 [exp] 642 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10035897 [exp] 634 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 596 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G167300 [exp] 1103 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 1071 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G213500 [exp] 682 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 682 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 677 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 654 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092400 [exp] 654 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.010G111700 [exp] 650 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.001G179400 [exp] 647 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.003G056200 [exp] 644 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10036437 pacid=23174445 polypeptide=Lus10036437 locus=Lus10036437.g ID=Lus10036437.BGIv1.0 annot-version=v1.0 ATGTCTCCAGTGGTGAATCCAACAGATGAGGAGCTTGAATCCAACAAAGAGATCGATGCTGGAAGCATGTCTTCCTCCCATCGTTATCCCGAAAACTCGA GATATGTTCACAAAGTGGGAACCGTTCCGAAGCAAAACCTGTTGAAAGAGTTCGTAGCCACCTTTAAAGAAACATTCTTCGCAGATGATCCTCTGCGTTC GTTCAAAGACCAACCGAGATCGAAGAAGTTGGTCTTGGGAATCCAGGCTGTATTCCCCATATTTGAGTGGGGTAGAAGTTATGACTTGGCCAAGTTCAGA GGGGATCTCATTGCTGGCCTCACCATTGCCAGTCTTTGCATTCCTCAGGACATTGGGTACGCAAAGCTTGCGAATTTGGATCCACAGTACGGACTATTAG CTGATGTTTCAGAGAATTTTGTTTTAGATTCGAGCTTCGTTCCCCCTCTGATATATGCAATCATGGGGAGTTCAAGGGACATAGCGATTGGACCAGTGGC TGTGGTATCGCTTTTGTTAGGGACGCTGCTTCAGAACGAGATCGACTATACCATTAACCCTACTGACTACAGAAGATTGGCCTTCACTGCTACCTTCTTT GCTGGCATCACACAAGTATCACTTGGATTTTTGAGGTTGGGGTTTTTGATAGATTTCTTGTCCCATGCTGCTATTGTTGGCTTCATGGGTGGTGCTGCCA TCACAATTGCACTCCAACAGCTTAAGGGCTTTCTTGGCATTAAGAAGTTCACCAAGAATTCAGACATCGTTTCTGTGATGCATTCTATAATTAAATCTGC CCATCATGGATGGAACTGGCAGACCATACTTATAGGTGCAAGCTTCTTGTGTTTCCTACTGGTCGCCAAGTACATCGGAAAGAAGAACAAGAAACTATTC TGGGTGCCAGCAATTGCACCTCTGATATCTGTTATTCTATCCACCTTCTTCGTGTACATAACACGTGCGGATAAGCAAGGCGTTGCAATCGTGAAGCACA TAAAGAAAGGAGTCAACCCTTCTTCCATTGACCAGATCTTCTTCTCTGGTGACCATCTACTAAAGGGTTTCAAGATTGGTGTTGTGTCTGGAATGATAGC TCTAACGGAAGCTGTTGCTATTGGGAGAACATTTGCAGGGATGAAGGACTACCAATTAGATGGAAACAAAGAGATGGTAGCTCTAGGAACAATGAACATT GTTGGCTCCTTCACTTCTTGCTACGTAGCAACCGGTTCGTTTTCGCGATCGGCGGTGAACTACATGTCGGGCTGCCAGACGGCAGTGTCCAACATCGTCA TGTCCATAGTTGTGCTCATGACCCTACTCTTCATCACACCACTCTTCAAGTACACACCAAATGCAATTCTTGCCGCCATCATCATACAGGCTGTTATCGG CCTGATCGATTACGAGGCTGCACTTTTAATTTGGAAGATCGACAAGTTCGATTTCATCGCCTGCATGGGCGCGTTCTTCGGCGTGGTCTTCATCTCTGTC GAAATCGGACTTCTCATTGCGGTGTCGATTTCGTTTGCGAAGATTCTGTTGCAAGTTACAAGGCCAAGGACTGCGATCCTAGGGAAGCTACCGAGGACCA CAGTGTACAGGAACATTCAGCAGTATCCTGAAGCAACTAAGGTTCCGGGGGTTTTGATTGTGCGGGTTGATTCTGCTATTTACTTCTCCAACTCCAACTA TGCCAAGGAAAGGATATTGAGATGGTTGTTAGATGAAGAAGAACGCATACAAATGTCAGGAGAGCCAAAAGTCCAGTTTCTAATAGTGGAAATGTCACCT GTTACTGACATAGACACGAGCGGGATCCACGCGTTCGAGGAGTTGTACCGGAGCCTGAAGAAGCGCGGCATTCAGTTGATACTGGCGAATCCGGGACCCG TGGTGATGGAGAAGCTTCACTCTTCGGATTTGGCTAACTTGATTGGTGAAGAACACATCTTTCTCACTGTTGCTGATGCGGTCAACTCCTGCTCTCCTAA GCTGGTTGACGACCGAGTCTGA
AA sequence Show only first row Show all	>Lus10036437 pacid=23174445 polypeptide=Lus10036437 locus=Lus10036437.g ID=Lus10036437.BGIv1.0 annot-version=v1.0 MSPVVNPTDEELESNKEIDAGSMSSSHRYPENSRYVHKVGTVPKQNLLKEFVATFKETFFADDPLRSFKDQPRSKKLVLGIQAVFPIFEWGRSYDLAKFR GDLIAGLTIASLCIPQDIGYAKLANLDPQYGLLADVSENFVLDSSFVPPLIYAIMGSSRDIAIGPVAVVSLLLGTLLQNEIDYTINPTDYRRLAFTATFF AGITQVSLGFLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKNSDIVSVMHSIIKSAHHGWNWQTILIGASFLCFLLVAKYIGKKNKKLF WVPAIAPLISVILSTFFVYITRADKQGVAIVKHIKKGVNPSSIDQIFFSGDHLLKGFKIGVVSGMIALTEAVAIGRTFAGMKDYQLDGNKEMVALGTMNI VGSFTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSIVVLMTLLFITPLFKYTPNAILAAIIIQAVIGLIDYEAALLIWKIDKFDFIACMGAFFGVVFISV EIGLLIAVSISFAKILLQVTRPRTAILGKLPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYAKERILRWLLDEEERIQMSGEPKVQFLIVEMSP VTDIDTSGIHAFEELYRSLKKRGIQLILANPGPVVMEKLHSSDLANLIGEEHIFLTVADAVNSCSPKLVDDRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	0	1
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	1.0	0.9806
					Lus10036438 [exp]	3.2	0.9196
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	3.9	0.9438
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	4.7	0.9195
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	4.9	0.9439
AT5G61820			unknown protein		Lus10003210 [exp]	6.0	0.9255
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	7.2	0.9392
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	8.5	0.9290
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	8.9	0.9355
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	10.6	0.9257

Compare expression of checked genes

Lus10036437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.