Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 228 / 7e-73 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 207 / 2e-64 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 196 / 2e-60 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT3G23250 187 / 1e-57 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G38620 186 / 1e-57 MYB AtMYB4 myb domain protein 4 (.1) AT4G09460 185 / 1e-57 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 184 / 6e-57 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G35515 182 / 1e-56 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT2G31180 182 / 2e-56 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G22640 181 / 7e-56 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016855 [exp] 225 / 4e-72 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10010273 [exp] 201 / 2e-62 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036336 [exp] 199 / 1e-61 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10001458 [exp] 191 / 6e-59 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10001548 [exp] 189 / 1e-58 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10033889 [exp] 189 / 4e-58 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10009448 [exp] 188 / 4e-58 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10002435 [exp] 188 / 1e-57 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10000411 [exp] 187 / 1e-57 AT4G09460 300 / 5e-103 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141000 [exp] 219 / 2e-69 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G198100 [exp] 206 / 1e-63 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 194 / 3e-59 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.019G081500 [exp] 190 / 7e-59 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.005G224100 [exp] 189 / 2e-58 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 186 / 4e-58 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.003G144200 [exp] 187 / 6e-58 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 187 / 6e-58 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.004G174400 [exp] 186 / 1e-57 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.001G086700 [exp] 186 / 1e-57 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036453 pacid=23174544 polypeptide=Lus10036453 locus=Lus10036453.g ID=Lus10036453.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCTTGCTGCGAGAAAGTAGGGTTGAAGAGAGGAAGGTGGGCGGCGGAGGAGGACCAGATCTTGACTGCTTACATCCGCCTGCACGGAG AAGGAAAATGGCGATCCCTCCCCAAGGACGCCGGGTTGTTGAGGTGCGGGAAGAGCTGCAGACTGAGGTGGATTAACTACTTGAGAGATGACTTGAAGCG TGGCAATATTACTAAAGATGAAGAAGAAGCCATTGTTAAGCTCCACAGCTCCCTTGGCAATAGGTGGTCGTTGATAGCAGCCCAATTATCTGGAAGAACA GACAATGAGATCATGAACTACTGGAATTCTCACCTTCGCCGGAAAATCTACACCTTCCACACCGTCGGCCAACCCCATTCTCCCTGTCTGGAATCATCTT CATCTGCCTCTTCGTCCTCCACCTCTCCCTCGTCCACACGCAGTAGAAACAGTAAGAGGCCGCCATCCCTGGTCACCGCCGGCGGCGGCAGTAAAGAAGA TCACGGCGAAATCGCAGCCTGTGGGGACCAACTACAGGAATTAAGAATGGATGAAGAGAAAGTTGCAGAGGATCATGCGGCGGGACCATATGAATGGCTT GACAGCGAGATGAACCGCCTAATTAAAAGCAGAGTAGTACTCCATGAAGATTCGCCCAGTGGGGAAATGAAGGATGCTGATGATCATGGAGGAGGAGGAG GAGGAGGGAGCAGCTGCAACAGTAATAGTAGCGATAATCAGCGCTCTTCCTCTGTTTCGCAACAATGGCTGGATTGGGAACAAATTACCGGAGGAGGGGA GATTAATTATAGTAGTAATCATCATCATCATCATCATAATGATGTTGTGTGGGACGAAGGAGAGGATGACGTCCTTTTGTCTTGGCTATTGGATGGTGTT GATCCATAA
AA sequence Show only first row Show all	>Lus10036453 pacid=23174544 polypeptide=Lus10036453 locus=Lus10036453.g ID=Lus10036453.BGIv1.0 annot-version=v1.0 MGRAPCCEKVGLKRGRWAAEEDQILTAYIRLHGEGKWRSLPKDAGLLRCGKSCRLRWINYLRDDLKRGNITKDEEEAIVKLHSSLGNRWSLIAAQLSGRT DNEIMNYWNSHLRRKIYTFHTVGQPHSPCLESSSSASSSSTSPSSTRSRNSKRPPSLVTAGGGSKEDHGEIAACGDQLQELRMDEEKVAEDHAAGPYEWL DSEMNRLIKSRVVLHEDSPSGEMKDADDHGGGGGGGSSCNSNSSDNQRSSSVSQQWLDWEQITGGGEINYSSNHHHHHHNDVVWDEGEDDVLLSWLLDGV DP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	0	1
AT4G36180			Leucine-rich receptor-like pro...		Lus10004266 [exp]	9.4	0.8895
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10016901 [exp]	15.7	0.8628
AT4G02110			transcription coactivators (.1...		Lus10025038 [exp]	23.2	0.8381
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	25.1	0.8363
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10026284 [exp]	28.9	0.8239
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	39.8	0.8263
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	40.9	0.8203
AT5G66800			unknown protein		Lus10019352 [exp]	43.0	0.7946
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031241 [exp]	49.7	0.8222
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	57.4	0.8019

Compare expression of checked genes

Lus10036453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.