Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 60 / 4e-10 GRAS RGL2 RGA-like 2 (.1) AT1G66350 56 / 5e-09 GRAS RGL1 RGA-like 1 (.1) AT1G14920 53 / 5e-08 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 52 / 1e-07 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT4G17230 51 / 2e-07 GRAS SCL13 SCARECROW-like 13 (.1) AT4G00150 51 / 3e-07 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT4G08250 48 / 2e-06 GRAS GRAS family transcription factor (.1) AT5G41920 48 / 4e-06 GRAS GRAS family transcription factor (.1) AT5G48150 47 / 5e-06 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G50650 46 / 1e-05 GRAS SCL7 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041128 [exp] 367 / 7e-126 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037753 [exp] 253 / 1e-81 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10023621 [exp] 134 / 4e-36 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10036460 [exp] 127 / 8e-36 AT3G03450 71 / 6e-14 RGA-like 2 (.1) Lus10024252 [exp] 132 / 2e-35 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10037758 [exp] 125 / 1e-32 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 124 / 2e-32 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10022414 [exp] 123 / 2e-32 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10036459 [exp] 120 / 3e-31 AT3G03450 171 / 1e-46 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 144 / 1e-39 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143600 [exp] 140 / 3e-38 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 134 / 6e-36 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 122 / 3e-32 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 108 / 1e-26 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 107 / 1e-26 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 98 / 2e-23 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.009G048700 [exp] 61 / 2e-10 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.002G086100 [exp] 59 / 9e-10 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.017G125200 [exp] 58 / 1e-09 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036457 pacid=23174469 polypeptide=Lus10036457 locus=Lus10036457.g ID=Lus10036457.BGIv1.0 annot-version=v1.0 ATGATCAACTTCTTGTCCTCCGCCCGCGGCAAGTCCCGTCAGGCGCCGCCGCTATCCATCATGGAAACGATCAATCTCGCCGCCACAAAGATCCCCCAAT GCCCCAACAACTCAGCCCACGCCAACTCAGCCCAGGTGAGCATTCCTTCCTTGTTAAATGTCCCTTTTGACCGTTCCATCTCCGGAGTTTCGTTCCACGA CCAGAAGAACGTGGAGCTCGTCGAATACCTTCTTTCCTCTGCCGACCGCGTCGCCAACAACCGCTGCGACGAAGCCTCCGCCTTGATCGATCTCTGCGAC CACTTGTCTTCCCCCGCCGGGAACCCAGTCCAGAGAACCGTCCACTCTTTCGCCAGAGCTCTCCGCGAAAGGGTCGCCGGAGAAACCGGCAGCGATCAGA GTACTTGTACTAACAACTTGTTCGACGACGACGTTTTAAGGCTACCGAGTCCTTCAATCCTTTTGTTTGTCCACGAGCGGTTCCCTTACTTCCGGATGCA ACAGTTGGCGACCGTACAACCCATGGCGGAATCAGCCGCCGCCGCCAGAAGGATTCACTGCATCGATTTGAATATCAAGTCGGGGCTCCACTGGACCGGG TTCATGCAGGCATTGGAGACCCAAGCCGATAATTACAAGCTCGATTTATTAAAGGTGACTGCGCCTGTGTGGGTCCCGTCGAGCCGTCGAAGCCACAGGG GAGTGGTTGACCAATTTCGCCCGGTCAAAGAAAGTCAACTTCTGGTTTAA
AA sequence Show only first row Show all	>Lus10036457 pacid=23174469 polypeptide=Lus10036457 locus=Lus10036457.g ID=Lus10036457.BGIv1.0 annot-version=v1.0 MINFLSSARGKSRQAPPLSIMETINLAATKIPQCPNNSAHANSAQVSIPSLLNVPFDRSISGVSFHDQKNVELVEYLLSSADRVANNRCDEASALIDLCD HLSSPAGNPVQRTVHSFARALRERVAGETGSDQSTCTNNLFDDDVLRLPSPSILLFVHERFPYFRMQQLATVQPMAESAAAARRIHCIDLNIKSGLHWTG FMQALETQADNYKLDLLKVTAPVWVPSSRRSHRGVVDQFRPVKESQLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	0	1
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	1.0	1.0000
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	1.4	1.0000
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	1.7	1.0000
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	2.8	1.0000
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	3.0	0.9626
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	3.7	0.9827
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	4.5	0.9876
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	4.9	0.9875
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	4.9	0.9703
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	6.3	0.9457

Compare expression of checked genes

Lus10036457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.