Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 83 / 3e-19 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G07530 81 / 1e-18 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G01570 81 / 1e-18 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 76 / 7e-17 GRAS RGL1 RGA-like 1 (.1) AT5G17490 74 / 4e-16 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G21450 71 / 4e-15 GRAS SCL1 SCARECROW-like 1 (.1) AT2G29060 71 / 5e-15 GRAS GRAS family transcription factor (.1) AT3G03450 70 / 9e-15 GRAS RGL2 RGA-like 2 (.1) AT5G59450 68 / 4e-14 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 67 / 1e-13 GRAS SCL9 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041128 [exp] 222 / 2e-71 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037753 [exp] 165 / 2e-49 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016888 [exp] 157 / 7e-48 AT1G66350 125 / 5e-32 RGA-like 1 (.1) Lus10037754 [exp] 125 / 8e-36 AT1G66350 156 / 2e-43 RGA-like 1 (.1) Lus10016889 [exp] 124 / 3e-34 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10016890 [exp] 105 / 2e-27 AT3G03450 152 / 5e-40 RGA-like 2 (.1) Lus10036459 [exp] 102 / 2e-26 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10001451 [exp] 102 / 3e-26 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10024252 [exp] 99 / 5e-25 AT3G03450 178 / 4e-49 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 108 / 2e-28 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.014G120000 [exp] 102 / 2e-26 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143500 [exp] 100 / 1e-25 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 99 / 5e-25 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143600 [exp] 97 / 4e-24 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143400 [exp] 96 / 5e-24 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.008G131700 [exp] 86 / 2e-20 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 81 / 8e-19 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 80 / 3e-18 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 77 / 3e-17 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036458 pacid=23174693 polypeptide=Lus10036458 locus=Lus10036458.g ID=Lus10036458.BGIv1.0 annot-version=v1.0 ATGTTCGGAGTAGAAGAGAAAGAAGCGGTATTGGTCTATTCGGAGCATTCATTCGCCACCATGCTGGGTAAACCAGACCGGATAGAGGCTCTTATGTTAG CGGTCAGGCGGTTGAACCCGCAACTCATGGTCGTGACCGAAATGGATGGGAACCAAAACGCGAGCCACTTCGGGACCAGGTTCGTGGAGGCGTTGTTCAA CTACGGCGCCGCTTTCGACAGTGTGGAGGCCTGCGTCGGGAGGGAGGATGACGTGAGAAGGAGGGCGATGATGGGGAGGATGATAGGGAACGTGGTGGCG TGTGAAGGACGGGAGCGAGTGATTCGAGGTGTGAGGCTAAAGGTCTGGAGAGCGTTCTTCAAAAGTAATAGTTACTGCGTTGAAATTCATCTAACTGCGG TTAATTAA
AA sequence Show only first row Show all	>Lus10036458 pacid=23174693 polypeptide=Lus10036458 locus=Lus10036458.g ID=Lus10036458.BGIv1.0 annot-version=v1.0 MFGVEEKEAVLVYSEHSFATMLGKPDRIEALMLAVRRLNPQLMVVTEMDGNQNASHFGTRFVEALFNYGAAFDSVEACVGREDDVRRRAMMGRMIGNVVA CEGRERVIRGVRLKVWRAFFKSNSYCVEIHLTAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10036458 [exp]	0	1
					Lus10012983 [exp]	2.0	0.7323
AT3G56230			BTB/POZ domain-containing prot...		Lus10017414 [exp]	6.0	0.6858
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	8.7	0.6647
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	14.6	0.6492
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	16.7	0.6337
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	18.7	0.6429
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10006525 [exp]	20.3	0.4812
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	21.6	0.6427
					Lus10021979 [exp]	22.2	0.6085
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001041 [exp]	24.1	0.6374

Compare expression of checked genes

Lus10036458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.