Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 170 / 2e-46 GRAS RGL2 RGA-like 2 (.1) AT1G66350 169 / 3e-46 GRAS RGL1 RGA-like 1 (.1) AT1G14920 167 / 3e-45 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 166 / 1e-44 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 160 / 9e-43 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G55580 147 / 8e-39 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 143 / 2e-37 GRAS GRAS family transcription factor (.1) AT3G54220 143 / 3e-36 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G59450 135 / 9e-34 GRAS SCL11 GRAS family transcription factor (.1) AT5G66770 134 / 1e-33 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037753 [exp] 321 / 9e-104 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10037758 [exp] 321 / 6e-103 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 318 / 1e-101 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10023621 [exp] 305 / 3e-97 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10022414 [exp] 301 / 3e-96 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 296 / 2e-94 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10024252 [exp] 296 / 6e-94 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10018100 [exp] 294 / 6e-94 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018101 [exp] 290 / 1e-92 AT2G01570 162 / 4e-44 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 407 / 1e-136 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 386 / 5e-128 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 345 / 2e-113 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143500 [exp] 308 / 2e-98 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 273 / 1e-84 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 263 / 5e-82 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 258 / 2e-79 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.015G008300 [exp] 183 / 6e-52 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.008G131700 [exp] 182 / 2e-50 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 182 / 6e-50 AT1G66350 296 / 2e-92 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036459 pacid=23174364 polypeptide=Lus10036459 locus=Lus10036459.g ID=Lus10036459.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCCAACAGCGTGAACACTGGCAGCGAAAGCACCGCCGCAGAATCAAGCAACAGTACTAAGCCGTCCGAACTGCCGGCCGGAGATGAAGAAG TACTGTCTACGAACGAAATCCTGAGGGTGGCAGCGAGGAGGATAATTAGTATGAGTACTTCATCGTCGACCCACACAATCGACCTGCCTTCTCTTATGAA CAATCCTTTCGATCTCTCCCCTTCGTCAGGAATTTCCTGTCAGGATGCTATCAGAGTGGAGCTCGTCGAGTACCTCCTCGCCGCGGCTGAAAAAGTCGGC AACCAGCGCCACGATCTCGCGGCCAATCTGCTCGACCTCTGTGACTGCTTGTCTTCCCAAACAGGGGACCCTGTACAGCGAGTCGTCTACTACTTCTCAG AAGCTCTCCGTACAAGGATCGATCGCGAATTGGGGAAGGGTCGAGTTACCGGGGTGGAAGAGGCTCCCGGGATGATTCTGTTGGGAAATGTGAGTGGAAT TGTTTGTGCTGCGACCGGACTACCACCCATTCTTCTCCTTCAGGCGGATGGACGCCGACGAAGTCCAAATGGACCCGCAGCCCGTTTGAACCTTGCCGGA GATGGGTTCGGCATCTGTCCGGCGCGGTGCCGCTATTTTTTGAATGAGGATATTTCAATTCCAAGCTATCTTCTCCAATCCTTGCACGAAAATGTACCCT TCTACCAAGTTGCTCACTTGTCTGCAATCCAGATCCTGTTGGAAAATTTGGGCAACTCCAAGCGAATCCACGTCATCGATGTCCAGATCAGATATGGACT TCAATGGACGGCCATGATGCAAGCTCTTGCATCGAGACCGGACCGCACGACCGAGCTTCTAAAGATCACTGCCCTCGGAACAAACGATTCCAAGGACCAG ATACAAGAAACCGGCAGACGACTAACGAGTTTCGCTAGGTCGATAAACGTCCCTTTTGATTTCAAGATCGTAATGGCCGGCTCACCAGACCTCCTCGACC TCCAACCGGAAATGTTCGACATTGATCCAAGGGAAGCGCTCGCGGTCTACACAGAAGGATACCTGAGCAACCGGATCGCAACCCCCGACAGCATGGAAGC ACTTATGAAACTATTGCGGAATTTCAATCCGCGGATCGTGGTGGTCCTAGAGGTGGAAGCGAATCACAATTCCCGGACGTTTGCCCATCGGTTTGTGGAG GCCCTGTTCTCGTACTCTGCGGTTTTTGACTGCCTGGACTGCTGTATGGAGGGTCAGGATTTCGAGAGCAGGATGGTGGTCGAATCGGTGGGGTTAAGGG AGGCGATAAGTAACGTTGTGGCGAAGGAAGGGGAAGAGAGAGGGTTTAGGAATGTGAGGATTGATGTTTGGAGGACATTGTTGGCTAGGTTTTCATTGGT GGAGTCCAAATTGAGTGCTGTGGTACTGTACCAGGCGAAACTGGTACTAAAGAGGTTTCCTAGTAGAAGGTTCTGTAAACTGTATGTTGATGGGAAGAGC TTGATTTTGGGTTGGAAGGACACTCCTATGATTTCCATTTCTAGTTGGAAGTTTGCTCGTTTGAGGAAGCACAAAGAGGATGAAGCCTTGGGATTATCGA TGTGA
AA sequence Show only first row Show all	>Lus10036459 pacid=23174364 polypeptide=Lus10036459 locus=Lus10036459.g ID=Lus10036459.BGIv1.0 annot-version=v1.0 MAAANSVNTGSESTAAESSNSTKPSELPAGDEEVLSTNEILRVAARRIISMSTSSSTHTIDLPSLMNNPFDLSPSSGISCQDAIRVELVEYLLAAAEKVG NQRHDLAANLLDLCDCLSSQTGDPVQRVVYYFSEALRTRIDRELGKGRVTGVEEAPGMILLGNVSGIVCAATGLPPILLLQADGRRRSPNGPAARLNLAG DGFGICPARCRYFLNEDISIPSYLLQSLHENVPFYQVAHLSAIQILLENLGNSKRIHVIDVQIRYGLQWTAMMQALASRPDRTTELLKITALGTNDSKDQ IQETGRRLTSFARSINVPFDFKIVMAGSPDLLDLQPEMFDIDPREALAVYTEGYLSNRIATPDSMEALMKLLRNFNPRIVVVLEVEANHNSRTFAHRFVE ALFSYSAVFDCLDCCMEGQDFESRMVVESVGLREAISNVVAKEGEERGFRNVRIDVWRTLLARFSLVESKLSAVVLYQAKLVLKRFPSRRFCKLYVDGKS LILGWKDTPMISISSWKFARLRKHKEDEALGLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036459 [exp]	0	1
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	5.9	0.8091
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	8.4	0.8091
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	10.2	0.8091
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	12.0	0.8061
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	13.2	0.8043
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	16.1	0.7739
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	16.1	0.7460
					Lus10038003 [exp]	17.9	0.7229
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	18.3	0.7798
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	18.7	0.7518

Compare expression of checked genes

Lus10036459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.