Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 70 / 8e-14 GRAS RGL2 RGA-like 2 (.1) AT2G01570 67 / 1e-12 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 66 / 1e-12 GRAS GRAS family transcription factor (.1) AT3G50650 65 / 6e-12 GRAS SCL7 GRAS family transcription factor (.1) AT4G08250 63 / 2e-11 GRAS GRAS family transcription factor (.1) AT5G17490 61 / 9e-11 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G66770 61 / 2e-10 GRAS GRAS family transcription factor (.1) AT1G66350 60 / 2e-10 GRAS RGL1 RGA-like 1 (.1) AT2G04890 59 / 5e-10 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 59 / 7e-10 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036459 [exp] 186 / 1e-55 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10018099 [exp] 145 / 3e-40 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022414 [exp] 144 / 3e-40 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10023621 [exp] 143 / 1e-39 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10016897 [exp] 141 / 7e-39 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10024252 [exp] 140 / 1e-38 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10037753 [exp] 140 / 1e-38 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10037758 [exp] 138 / 1e-37 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10018098 [exp] 132 / 4e-36 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 159 / 2e-45 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 147 / 6e-41 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 147 / 8e-41 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 143 / 5e-40 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 127 / 8e-34 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 123 / 2e-32 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 100 / 1e-24 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.005G175300 [exp] 77 / 3e-16 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 75 / 2e-15 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.001G326000 [exp] 70 / 1e-13 AT1G66350 296 / 2e-92 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036460 pacid=23174682 polypeptide=Lus10036460 locus=Lus10036460.g ID=Lus10036460.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTCGACAGAGTACGACCGGAAGAATTTCAGCTGACACAAGAATTGTCCACGCCCGAAATCCTGAGAATAGCTGCAAGAAGGATCATGAGCA TAAGCTCCTCTTCAAATTCAATCGACCTTTCTTCACTAATGAACAACCCTTTTGATCTCAGTTCCCCGTCAGGACTCTCCTATCAGGACGCCATCCGAGT TGAGCTCGTTGAATATCTCATGGCGCCCGCCGAAAAAGTCGGCAACAACAGAACTCACGACCACCAGGAAGCAATCCATTTGCTAAACCTCTGCGACTGC TTGTCTTCCAAAACAGGGGACCCTATCCAGAGAATCGTGTACTACTTCTCCCAAGCCCTACGCAAACGGGTCGATCATTCCGATCCGACCAGAAACTGCA ATAATCGACCCGAAATGGTTAGCGATCCCAATGCGGAGAAGGCATTAACAACGGTTCCTCTCCGATTACTCCAATCTGTTCAAGAGAAAATACCGTTCCG GGCGGTCGTCCAGATGTCAGGAATTCAGATACTCCTCGAAAACGTGGGGAGTTCGAAACGGATCCATGTCATCGACCTCCAGATCCGTACCGGACTTCAA TGGACGGCCATGATGCAAGCTCTGGCATCGAGATGGGAGAGCCGTCCAATCGAGCTTCTCAAGATCACTGCGGTTGGTACCGGTACTTTAAAAACTTGA
AA sequence Show only first row Show all	>Lus10036460 pacid=23174682 polypeptide=Lus10036460 locus=Lus10036460.g ID=Lus10036460.BGIv1.0 annot-version=v1.0 MAAVDRVRPEEFQLTQELSTPEILRIAARRIMSISSSSNSIDLSSLMNNPFDLSSPSGLSYQDAIRVELVEYLMAPAEKVGNNRTHDHQEAIHLLNLCDC LSSKTGDPIQRIVYYFSQALRKRVDHSDPTRNCNNRPEMVSDPNAEKALTTVPLRLLQSVQEKIPFRAVVQMSGIQILLENVGSSKRIHVIDLQIRTGLQ WTAMMQALASRWESRPIELLKITAVGTGTLKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	4.4	0.9732
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	6.0	0.9671
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	6.5	0.9715
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	10.2	0.9669
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	10.7	0.9654
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	14.8	0.9591
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	16.3	0.9637
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	16.8	0.9638
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	16.9	0.9557
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	17.4	0.9633

Compare expression of checked genes

Lus10036460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.