Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 353 / 8e-121 ATPUP3 purine permease 3 (.1) AT2G33750 327 / 1e-110 ATPUP2 purine permease 2 (.1.2) AT1G28230 301 / 3e-100 ATPUP1, PUP1 purine permease 1 (.1) AT1G30840 139 / 1e-37 ATPUP4 purine permease 4 (.1.2) AT4G18220 135 / 3e-36 Drug/metabolite transporter superfamily protein (.1) AT4G18205 114 / 3e-28 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT1G44750 112 / 1e-27 ATPUP11 purine permease 11 (.1.2.3) AT4G18210 111 / 2e-27 ATPUP10 purine permease 10 (.1) AT4G18197 111 / 4e-27 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT2G24220 108 / 2e-26 ATPUP5 purine permease 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041133 [exp] 517 / 0 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10020950 [exp] 461 / 1e-162 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 409 / 5e-143 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10010757 [exp] 300 / 9e-100 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10035636 [exp] 298 / 9e-99 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10020416 [exp] 285 / 7e-94 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10015832 [exp] 282 / 9e-93 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10020939 [exp] 247 / 7e-79 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008714 [exp] 246 / 1e-78 AT1G28220 286 / 7e-95 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 404 / 2e-140 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 246 / 7e-79 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G147600 [exp] 142 / 1e-38 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 134 / 1e-35 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.014G043900 [exp] 130 / 3e-34 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.006G184900 [exp] 127 / 3e-33 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.001G352200 [exp] 119 / 4e-30 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.003G156900 [exp] 105 / 7e-25 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 100 / 1e-23 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10036465 pacid=23174388 polypeptide=Lus10036465 locus=Lus10036465.g ID=Lus10036465.BGIv1.0 annot-version=v1.0 ATGGCGGAAATGAATGGCTACTATAAGCAACGAGAGGATATCACCGGCGGCCAGGAGGAATCGGCCGCGGCGGCTGCTCCGACAATGAAAACGGCGTTGC TAATCATTAACTGCATACTACTAGCAGTCGGAAATTGCGGGGGCCCACTAATAATGCGGCTCTACTTCCTCCACGGCGGCAAGAGGGTATGGCTCTCCAG CTGGCTCGATACCGGCGGCTGGCCAATCATGCTCATCCCTCTTTCCATAGCCTATACCCTCCGCCACCGCCGCCGGAGAGGCTCAACGTCGACGACAACG TTCTTCCTCATAAAGCCGCGCCTCTTCTACGCCGCTGCTGTCGTCGGCGTCCTCACTGGCTTCGACTACTACATCTACGCCTACGGGGTGGCGCGCCTCC CCATGTCCACGTCGGCTCTGGTGATTGCCACCCAGCTGGCTTTCACCGCCGGGTTCGCTTTCCTCATGGTGAAACAGGTAGGGGAGAGAATTAGTTCGGG TCAGTCTTACTCGACCGGGTTCACTCCGTACTCGATAAACGCTGTCGTACTGCTGACAGTGGGCGCCGGAGTGTTGACGATGAACTCGAGCGGGGACCGC CCGGAGAACGAGTCCAAAAAAGAGTACGCCATGGGGTTCGTGATGACGCTGGTTGAGCTGGCGTACAAGAAGGCTGCTGACGGCGAACAGGTGTTGAGCT ACACGGTGGTGCTGGAGTTTCAGATGGTCATGACGTTTTTCGCCACCGTCGTGTGTACCGTCGGCATGCTGGCTAACCACGATTTTCAGGCGATTCCAAG AGAGGCAAGGGAATCAACACTGGGAGAGACACAGTACTACGTCGTATTGGTCTTCAGCGCCGTCATCTGGCAGTTCTTCTTCCTGGGAGCGATCGGAGTC ATATTCGTGGGGAGCTCGTTGCTGTCGGGAGTCCTGATCGCCGTCCTGCTCCCGGTGAGGGAAGTCCTCGCCGTGGTGTTCTACAGCGAGAGTTTCAAGG CGGAGAAGGGAGTGTCTCTGGGCCTTTCCCTGTGGGGATTTGTCTCCTACTTTTACGGAGAACATCGACAGAAGAAGAAGAAGAAGAACAAGGAGGAGAG GTTGGGTTACGCTCCACAGAGGGAAATGTCGTCCTCGTCTCAAATAGCTTAA
AA sequence Show only first row Show all	>Lus10036465 pacid=23174388 polypeptide=Lus10036465 locus=Lus10036465.g ID=Lus10036465.BGIv1.0 annot-version=v1.0 MAEMNGYYKQREDITGGQEESAAAAAPTMKTALLIINCILLAVGNCGGPLIMRLYFLHGGKRVWLSSWLDTGGWPIMLIPLSIAYTLRHRRRRGSTSTTT FFLIKPRLFYAAAVVGVLTGFDYYIYAYGVARLPMSTSALVIATQLAFTAGFAFLMVKQVGERISSGQSYSTGFTPYSINAVVLLTVGAGVLTMNSSGDR PENESKKEYAMGFVMTLVELAYKKAADGEQVLSYTVVLEFQMVMTFFATVVCTVGMLANHDFQAIPREARESTLGETQYYVVLVFSAVIWQFFFLGAIGV IFVGSSLLSGVLIAVLLPVREVLAVVFYSESFKAEKGVSLGLSLWGFVSYFYGEHRQKKKKKNKEERLGYAPQREMSSSSQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10036465 [exp]	0	1
					Lus10025936 [exp]	2.2	0.8573
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	2.8	0.8936
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	4.0	0.8966
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10039986 [exp]	4.2	0.8485
AT3G05165			Major facilitator superfamily ...		Lus10018956 [exp]	5.9	0.8070
AT3G43810		CAM7	calmodulin 7 (.1)		Lus10022589 [exp]	6.0	0.8361
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10003318 [exp]	7.0	0.8532
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	7.5	0.8513
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	8.0	0.8613
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	8.8	0.8661

Compare expression of checked genes

Lus10036465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.