Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 366 / 1e-103 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041413 [exp] 2535 / 0 AT3G52250 545 / 2e-166 Duplicated homeodomain-like superfamily protein (.1) Lus10040386 [exp] 1372 / 0 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1) Lus10023504 [exp] 1360 / 0 AT3G52250 577 / 3e-177 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041900 [exp] 1037 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.010G220000 [exp] 1009 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036515 pacid=23174444 polypeptide=Lus10036515 locus=Lus10036515.g ID=Lus10036515.BGIv1.0 annot-version=v1.0 ATGCCGCCGGAGCCATTGCCCTGGGACCGGAAGAAGCACGAGTCGTCTTCTTCTTCATTAGGGTCAACCCCTCGCTGGAGGGACTGCCCCGCGGGTCACT ATGGTTCCCACCGTGACTTTTCTCCTCGCTGGGCTGGAGGATCCACTGAGTTCCGCAGACCTTCCGGTCATGGTAAGCAAGGCGGCTGGCACCTGTATGC TGATGAATCTGGTTATGGGTATGGCCCTTCCAGGTCCAACGACAAGATGAAGGAAGCTACTAATGGAAGGCCCCTATTTTCACGAGGGGATGGAAAGTGT GGCAGGAGTGGTAGAGATAACAGAGGGCCTTATGGTCAGAGAGACTGGGGAGCATATTCATGGGATATGAGCAATGGATCCACGAATGGACCTAGAAGAC CCTATGATGTGAGTAATGATCAGATGTCAGTTGATGATATGCTAACATGTCCCCCTTCACATCCTCCTAACTCTGACTTTGGAAGCACATGGGATCAGCT TCAGTTAAGACAGCAGCATGGCAATAATGAGGATGGAGGCAACGCCTTGGGCTCTGGCCAAAGGGGTGATAAAGATAACTCATTGGATTGGAGGCCTCTA AAGTGGACTCGTACAGGAAGCTTGTCTTCCAGGGGGTCTGGATATAGCCACTCCAGCAGTTCAATGAATCTTGGGGCTGTGAAGGCTAATGGTGGAAAGA ATGAGATGATACCGAAGAATGGGACCCCAATTCATTCCACTTCAGGAGATGTGACTGTTGTCCGTGCTGATTCAGTGACATTGTCTGATGAGACTATGTC AAGAAAAAAGCCACGCCTTAAATGGGGTGAGGGACTGGCGAAGTATGAGAAGAAAAGAGTTGAAGGACCTGAGACTAGTGTGACCAGAGATGATACCACC TTGTTTACTAATAGCCTGGAACCTGTTCACTCGAGAAGCTCAAGCCTGCCTGACAAAAGCCCTAGGCAGATGGTTTATCCAGAATGTGTTTCTCCTGCAA CTCCTTCCTCCATTGCTTGTAGTTCCTCGCCAGGTGTTGAAGATAAAGTTTTTTGTCCAGTAGTCAGTGTTGATAATGATGCTAGTAATTTATGTGGTTC TCCTAGTGTTGGCTCTCAAGGCCGTGAGGAGTTTTCTTTCAGTTTAGAAAAGCTGGATATGGGTTCTATTCCTAATTTGGGGTCCTCACTCATTGAGATG ATTCAGTCAGAAGATTTATGTATAGTGGACTCTTGTTTTGAGAAGTCAACTGGTATGAATAAGTTGCTTGTTTGGAAAGGCAATGCTTTGAAGGCATTGG AAACAACAGAGACTGAGATAGATATTCTTGAAAATGAACTAAAGTCACTGAAGTCTGATTCAAAAAGCAAGCTTTTGGGCTCATCGCCGTCTGATTCCCT AACAATAAGTGGTCATGCCATTGCTTGCAGTGAACAGGGAACTTTATGCCGTGATGACCTATGTCGTCCTGTATCCAGTATGGATGAAGCTGTGGATGGA ATTCCTAATCCGGATGATGCTTTCGAAGATGGTTGTGCCATGGATGACGACATTGATAGTCCTGGGACTGCTACATCTAAGTTTGTTGAACCTTTGATAT CTGTGTCTGATATGGTGAGATGCACTCAACATTCTGGTGTTGCTGCAGATGAATCTTCAAATTTGATGGTGGAGAAAGGAAGTGCGCTTGCAGCATGCAA TGTTAGTAGCATACACTGCAACAATAATGCACTTCTCTCTGCTAGTAAGAGTTCTGTGGAAGACGGATACTCTAACCTATGTACTGCTATATTAGCCTCA AATAAGGAATCTGCTAGTACAGTAGGTGAAGAATTTTATAGGTTATTGCCTAGGGATCGTTGCTCGGTTAATCATTCAGGAGTTGCGAATATATTATCCG GGCAAACTGATGCCTTGGTTATGAAAAAATTCTTAGCGAGGAGACGCTTGATGAAGATTAAGGAGAAAATTGTGGCCCTGAAGTTCAAATCATTACAACA TTTGTGGAGGGAGGATATGCACTTGCTCTCTGTAAATAAGTTCAAGGCAAAATCTCAGAAGAAATTTGAGTCAAGCTTGCGGCCTATTTATAGTATCCAT AAGAAGCACCGGTCTTCATCTCGCATGCGAATTTGTTCTCCTGGTAGTATGGGCCTGGTTCTTTCTCCGGAGATGCTAAATTTCAGTAGAAAGTTGCTTG CAGATTGCAGTGTCAAAGTTTACAGGGACAAGTTGAAAATGCCAATACAGATTTTGGATGACAGCGAGAGGAGAGTATCAATGTTCATTTCTGGCAATGG ATTAGTTGAAGATCCCTTTGCTGTTGAGAGGGAAAGAGCAATGATAAATTGTTGGAGTTTGGAAGAGCGTGAAATCTTTATTGATAAGCTAGCCATATGT GGAAAGGATTTTAAGAAAATTTCCTTCTATCTTGAACATAAGACTACTGCAGACTGTATTGAATTTTACTACAAAAATCATAAGTCTGACTCTTTTGGGA AAGTCAAGAAGAACAAGCAATACAAGTCTTTAACAAATTACTTGATGTCATCCGGTAAGAAGTGGAATCGTGAGATGGGCACAGCTCCACTTGATACGTT AGGTGCTGCCTCGGTGGTGGCTGCTCATCCTGACAGGAAAATGGGAAGTAGGAAAGTGTCTTCTAGTAAAATCTTTATCAGAGGCTATGATAAATGCAAA ATCTTGCAAGGTGATGATGGTAATTCAGAAAGGTTAAACAACTATGATGTCCTTGTGAATGAAAGAGAAACTGCTGCTGCTGATGTGCTAGCTGGTATCA GTGGTTCTATGAGTTCTTGTATCACTACTTCTGCGGATCGTGCTGAGGGGTTTTACGACTATAATGCACGGAGGACAGATACCACTGATAGACGTCCCTC AATATCTGATGTAACCCAGAATGTCGATGAAGAGACATGTTCTGATGAGAGCTGTGGCGAAATGGATCCTGCTGATTGGACAGATGAGGAGAAAACAGCT TTTGTTCGGGCCGTTTCTTTGTACGGAAAGGATTTTGCATTTATTTCCCGTTGTGTACGGACAAGGTCTCAGGAGCAGTGTAAGGTGTTCTTTAGTAAAG CAAACAAGTGTCTTGGGTTGGACCATATTCACTCTGGCATAGGAAAGTTAGACCCATCATTAAGTGAGGATGCAAATGAAGGTGGGAGTGACATGGAAGA TGCCACTGTGGATGGCTCTGAAGAAATTCCTTCTAAGTTGGACCTGGACCCACTCCCTCGAGTTATGTGTACTGCTGGGATTTTAAAGCAGGATGTTTCT GATGGTAGGGTTGGAATCAATCTTGAAACTGATTTGAATGTATCCGATGAGAAAGATGTTGCAGGAGCTATAGAAGAGGAGAATTTGATGGCTGTAGATA CTGTGAAAGGTCACTTAGTCCAGTCAACTCATCTTGCTGATGGTGAAGTCATTAACGGTTGTGGTCGTGTTTCTCTTCGAATGAATGGTCAGACAGTTCA AATAGAATCTGGTGTTACAGAAGGTGAAAGAGATTGTCAAACCAAAGAAGTCCAACATCTTCCTTTGGATATGGGCTCGTCTTCAGATGACAGTCTTGTG GGAAATATTACTCAGAGACAAGTTGAAGTGAATTCTGTGGAGAAGAGTTCGTCAATGAAAGTGAATAATAATTTGGTTAGTGCTGTTTCTGTGACATTGA ACTCTGCTGCGACACACTGTGATAAAGCGCTCGATTCGGGGGAGATCTCAGGCAGTGTACAAGAGAATTGTAGTAAGCTGGATGGAAGTGGCTATGTGCA ACCTTCCGTATGTTGCCCTGTGGTGAACCATGGGGAGTATTCTGAGAGTGGCTGTAGTAAAGTTCAAACTCTCACGGAGAAAGTGACCATGGGGAATACT TCTGATGCTAAGCTCCTTTTGAACGCTGAACAGTTTATGGGCAACCAGTTGGTAGCTGAGGAGGGCTCCTGTCTTGAGAATTCCAGTAATTGTGAGGGTC AATGTTCGGTTCCTGAACTTCCCCTTCTGAGCCAGCCTGGAAGTGCAACGAACATGGAAAAACGAAGCAGGAATGGAGATGTTAAACTATTTGGGAAAAT ACTGAGTAATCCTGTATCATCGTCATCATCACAAAAGCCAGTTGCTGCACATGGGAGTGGTGAAAAGAGCACGCAGCCTCAGAGAACCTTAAAATTCAAT GGTGATCACAGCGCAGATGATACTTTAGTGAATTTTGATAAAAATAATAGTGCAGGAGTGAAAAATGTTCCGATTAGGAGTTACGGTTTCTGGGATGGAA GCAGAATACAGACAGGGCTGACTTCGTTGCCGGATTCAGCCATTCTACTTGCCAAGTATCCTGCTGCATTCACCAATTTTCAGGGGTCATCCTCACCGAA GCTTGATCCGGTAGCACTGGCGACAACTTCCAAGAACATTGAACGAAGTATGAATGGAGTAGTTAGTATCCATCAAAGGGGGGACATAAACAGCAGCAGC AGCAGTAGTAATGCACTGCTAGATTTCCAGAGGTACATAAGTACAGACGGTAGTAAGAAAGTGGAGCAGCAGGAGGGAGGGAAAGGGTTGGAGTCGAGGA CGGTTTCGGATCCAGTGGCAGCGATTAAGATCCATTTCGCAAAGGCTGCTGATCAAAATTGCGGAGATAGTGAGGCTCCTGCTCAAGGGGCAATGGTAAA ATAG
AA sequence Show only first row Show all	>Lus10036515 pacid=23174444 polypeptide=Lus10036515 locus=Lus10036515.g ID=Lus10036515.BGIv1.0 annot-version=v1.0 MPPEPLPWDRKKHESSSSSLGSTPRWRDCPAGHYGSHRDFSPRWAGGSTEFRRPSGHGKQGGWHLYADESGYGYGPSRSNDKMKEATNGRPLFSRGDGKC GRSGRDNRGPYGQRDWGAYSWDMSNGSTNGPRRPYDVSNDQMSVDDMLTCPPSHPPNSDFGSTWDQLQLRQQHGNNEDGGNALGSGQRGDKDNSLDWRPL KWTRTGSLSSRGSGYSHSSSSMNLGAVKANGGKNEMIPKNGTPIHSTSGDVTVVRADSVTLSDETMSRKKPRLKWGEGLAKYEKKRVEGPETSVTRDDTT LFTNSLEPVHSRSSSLPDKSPRQMVYPECVSPATPSSIACSSSPGVEDKVFCPVVSVDNDASNLCGSPSVGSQGREEFSFSLEKLDMGSIPNLGSSLIEM IQSEDLCIVDSCFEKSTGMNKLLVWKGNALKALETTETEIDILENELKSLKSDSKSKLLGSSPSDSLTISGHAIACSEQGTLCRDDLCRPVSSMDEAVDG IPNPDDAFEDGCAMDDDIDSPGTATSKFVEPLISVSDMVRCTQHSGVAADESSNLMVEKGSALAACNVSSIHCNNNALLSASKSSVEDGYSNLCTAILAS NKESASTVGEEFYRLLPRDRCSVNHSGVANILSGQTDALVMKKFLARRRLMKIKEKIVALKFKSLQHLWREDMHLLSVNKFKAKSQKKFESSLRPIYSIH KKHRSSSRMRICSPGSMGLVLSPEMLNFSRKLLADCSVKVYRDKLKMPIQILDDSERRVSMFISGNGLVEDPFAVERERAMINCWSLEEREIFIDKLAIC GKDFKKISFYLEHKTTADCIEFYYKNHKSDSFGKVKKNKQYKSLTNYLMSSGKKWNREMGTAPLDTLGAASVVAAHPDRKMGSRKVSSSKIFIRGYDKCK ILQGDDGNSERLNNYDVLVNERETAAADVLAGISGSMSSCITTSADRAEGFYDYNARRTDTTDRRPSISDVTQNVDEETCSDESCGEMDPADWTDEEKTA FVRAVSLYGKDFAFISRCVRTRSQEQCKVFFSKANKCLGLDHIHSGIGKLDPSLSEDANEGGSDMEDATVDGSEEIPSKLDLDPLPRVMCTAGILKQDVS DGRVGINLETDLNVSDEKDVAGAIEEENLMAVDTVKGHLVQSTHLADGEVINGCGRVSLRMNGQTVQIESGVTEGERDCQTKEVQHLPLDMGSSSDDSLV GNITQRQVEVNSVEKSSSMKVNNNLVSAVSVTLNSAATHCDKALDSGEISGSVQENCSKLDGSGYVQPSVCCPVVNHGEYSESGCSKVQTLTEKVTMGNT SDAKLLLNAEQFMGNQLVAEEGSCLENSSNCEGQCSVPELPLLSQPGSATNMEKRSRNGDVKLFGKILSNPVSSSSSQKPVAAHGSGEKSTQPQRTLKFN GDHSADDTLVNFDKNNSAGVKNVPIRSYGFWDGSRIQTGLTSLPDSAILLAKYPAAFTNFQGSSSPKLDPVALATTSKNIERSMNGVVSIHQRGDINSSS SSSNALLDFQRYISTDGSKKVEQQEGGKGLESRTVSDPVAAIKIHFAKAADQNCGDSEAPAQGAMVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	0	1
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	1.0	0.9361
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	1.4	0.9201
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	2.8	0.8995
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	3.2	0.9021
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	4.0	0.8888
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	5.4	0.8746
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	5.7	0.9165
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	6.8	0.8800
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	10.2	0.8828
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	10.9	0.8875

Compare expression of checked genes

Lus10036515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.