Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19500 140 / 3e-36 Tryptophan/tyrosine permease (.1) AT2G33260 92 / 5e-20 Tryptophan/tyrosine permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041401 [exp] 766 / 0 AT5G19500 175 / 1e-48 Tryptophan/tyrosine permease (.1) Lus10036099 [exp] 147 / 4e-39 AT5G19500 588 / 0.0 Tryptophan/tyrosine permease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221900 [exp] 501 / 2e-175 AT5G19500 141 / 2e-36 Tryptophan/tyrosine permease (.1) Potri.001G224950 [exp] 145 / 3e-38 AT5G19500 606 / 0.0 Tryptophan/tyrosine permease (.1) Potri.008G040400 [exp] 113 / 2e-30 AT5G19500 58 / 2e-11 Tryptophan/tyrosine permease (.1) Potri.019G031800 [exp] 76 / 1e-14 AT2G33260 567 / 0.0 Tryptophan/tyrosine permease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF03222 [flax] [poplar] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Lus10036527 pacid=23174558 polypeptide=Lus10036527 locus=Lus10036527.g ID=Lus10036527.BGIv1.0 annot-version=v1.0 ATGGTGCGTCATTGGTCCCTGGAGGAACAACAGATCACACAGATGTCAAACGTTTTCACATTCATCTGTGGCTATCCTGCTTCCAATTGCAAATCTGGGA TAGTGCAAAGAAGATTCTGGCTTTGTACAACAAAGAAAAGCAGCAAGGGTTCTGTAGAGACGAGCAGTGATGACCCAATTGCTGAAGTTGCAGAGAAAAA AGGAACCATTGGTGGAGCAGTTGCGTTGATAATTGGCACAAGTATTGGTTCAGGCATACTTGCTCTCCCCAACAAAGCTTCCCCTGCGGGTATAATTCCA AGCTCCATTTCCATGATAGTATGCTGGGGCTTCTTACTAATTGAGGCAATGTTACTAGTGGAGCTCAATGTGGGATTAAGGAGGAAAAAGGGGAAAAGGG AAGATGGGAAAGGAATTGAGGTTATTTCCATTAGAACTATGGCTCAAGATACATTGGGAGATTGGGGTGGTAATTTGGCCACCGTTACTTATGTTTTCTT GGGCTACACTTCCGTGGTTGCTTATGCTTCCAAGTCCGGGGAGATTCTATTCCATTTGTTGAATATTCCGGAATCTGTGTCTGGATGTGTTTTCACTCTT GTTTTCACCTTGCTGATCTCCGTTAGTGGGACTGAAACAACTGACCAAGTGAACCAGTGGCTCACTGCCTCCATGATAGGTTTGCTTCTTTGTATTGAAG TGGTCTGTGTTGTGTTTGGAGGGTGGCCTGGGTTGATGGAGGGAGGTGGGAATTGGGGAAAAGTTCCAGATACTGTTCCTGTCATGATTTTCTCACTAGT CTACCATGATCTTGCACCCGTTCTATGTGCTTATTTGGGTGGTGATATTGGACGATTAAGGACATCAATTTTGATTGGGAGCTTTGTTCCATTGGTGGGA TTGCTTGTTTGGGATGCAATAGCACTTGGCCTTTCAGCTCAGGCTCATCAAGTTGGTGGTGACCCTGTTGAATTACTTGTGAACGTGGGATGGACCGGTG TTCCATTAATGGTTCAGGCCTTCTCGTTGGTAGCGGTAGGGACATCGCTGATCGGTACTCTCCTTGGCTTCTCTGAGTTCTTCAAAGAACAGATCCGGAA CCTCTCGTTGACTTCAACAAAGGAGCCGGCAGACATAACACTTAGAACAAGCTTCACGGCAATGACAATTGCAGTTGCTCCAGCGCTGGTTGTCTCGGCC ACGGTTCCGGATGCATTCTCTGCTGCTACTGATATTGCAGGAGGCTACTGCATGACCATGTTGTACGGAGTTCTTCCACCGGCAATGGTATGGGCTGTAC GCGGAAAGAAGGGGTTGTCAAGAACCAAGACTGTGTTACTTGTTGGAGTTGCCACGTTTGCTTGTGGAATAGTGGTGGAGCAATTATTACACGACTTCTC TGCCCTAAACTAG
AA sequence Show only first row Show all	>Lus10036527 pacid=23174558 polypeptide=Lus10036527 locus=Lus10036527.g ID=Lus10036527.BGIv1.0 annot-version=v1.0 MVRHWSLEEQQITQMSNVFTFICGYPASNCKSGIVQRRFWLCTTKKSSKGSVETSSDDPIAEVAEKKGTIGGAVALIIGTSIGSGILALPNKASPAGIIP SSISMIVCWGFLLIEAMLLVELNVGLRRKKGKREDGKGIEVISIRTMAQDTLGDWGGNLATVTYVFLGYTSVVAYASKSGEILFHLLNIPESVSGCVFTL VFTLLISVSGTETTDQVNQWLTASMIGLLLCIEVVCVVFGGWPGLMEGGGNWGKVPDTVPVMIFSLVYHDLAPVLCAYLGGDIGRLRTSILIGSFVPLVG LLVWDAIALGLSAQAHQVGGDPVELLVNVGWTGVPLMVQAFSLVAVGTSLIGTLLGFSEFFKEQIRNLSLTSTKEPADITLRTSFTAMTIAVAPALVVSA TVPDAFSAATDIAGGYCMTMLYGVLPPAMVWAVRGKKGLSRTKTVLLVGVATFACGIVVEQLLHDFSALN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	0	1
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	1.0	0.9624
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	3.5	0.8873
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	5.7	0.8493
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	6.2	0.8677
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	7.1	0.8377
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	7.3	0.8602
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	8.2	0.7857
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	8.5	0.8341
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	8.8	0.8211
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	9.2	0.8591

Compare expression of checked genes

Lus10036527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.