Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 486 / 1e-168 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 479 / 1e-164 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 462 / 1e-160 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 402 / 2e-135 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 383 / 6e-127 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 234 / 2e-68 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 224 / 9e-67 GRAS RGL1 RGA-like 1 (.1) AT2G29060 221 / 4e-64 GRAS GRAS family transcription factor (.1) AT3G46600 214 / 1e-63 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 217 / 2e-63 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035840 [exp] 912 / 0 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 493 / 8e-171 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 489 / 5e-169 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 471 / 7e-163 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 429 / 1e-145 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 424 / 1e-143 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10042776 [exp] 381 / 1e-126 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 379 / 1e-125 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10003772 [exp] 365 / 9e-125 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409500 [exp] 691 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 665 / 0 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.014G164400 [exp] 505 / 2e-175 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 499 / 2e-173 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 426 / 2e-144 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 412 / 6e-139 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.005G186500 [exp] 389 / 1e-129 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 388 / 3e-129 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.017G142400 [exp] 244 / 5e-73 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.001G326000 [exp] 242 / 3e-72 AT1G66350 296 / 2e-92 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036623 pacid=23174399 polypeptide=Lus10036623 locus=Lus10036623.g ID=Lus10036623.BGIv1.0 annot-version=v1.0 ATGGATACACAGCAGCTATTTGGGTTCAGTACTGTGACTCATTCGGGCATGTCTTACTCGTCTCCTTACCCGACTGTTTCCTCTTTGCCTGATAGAAGAC TATTGGGTTCCTTAAAGTTTGAGATAGGGAACTCACCTACCTCCTCATTTTCAACTCAATTGGATAATGAAACTGTTAGTTCAGTGAGTGATAGCCACGA ACAACCCAGCTCCACAAGTGATTCTCATGGTGAAAGTGGAAGGCCAAACGAACAAGGTAAGGAAAGTAGCAGCAGGGCATGGGGCCAAGACGAAGGCCGT GATTCTCGGCCCCGAGCAGCAACGTTGATGTCCCATCCCCGACAAGTAGAAGCAGATGCTCCTGTTGAGAAACGTCATAAAGTTATGGCAGAAGAATCAT CAAGTTTACAAAGTTCCCAGCCTGGCAATCTGAAGCAATTGTTAATTGAATGTGCCAAGGTTATTGCTGAAAACAATATGGGTTATTTTGAAAACCTGGT TGATAAGGCTAGAGGTGAGGTGTGGATCACTGGGGAACCAATTCAGCGCTTAGGTGCTTATCTAGTTGAGGGATTGGTGGCGAGGAAGCAATCATCAGGG AGTAACATCTACCGCACCCTGAATTGTAGGGAGCCTGAAAGCAAAGACTTGTTATCTTACATGCAGATTCTGTATGAAATCTGCCCATACCTCAAGTTTG GGTACATGGCAGCAAATGGTGCCATTGCTGAAGCTTGCAGGAATGCTGAACGCATACATATAATTGACTTCCAGATCGGTCAAGGGACGCAATGGATGAC TCTTCTTCAAGCTCTTGCAGCCAGACCAGGTGGTGCTCCGCATGTACGTATCACCGGTATTGACGACCCTCTCAATAAGTATGCTCGTGGTGGAGGATTA GACGCAGTTGGGAAGAGATTGGCAGCACTTTGTGAGAAGTTCAACATCACAGTTGAGTTCCAAGGCCTTCCTGTCTTTGCCCCTGATGTTACGCGAGATA TGCTTGATGTCCGACAAGGGGAGGCCCTGGCAATTAACTTACCGTTACAGTTGCACCACACTCCCGACGAGAGCGTGGATGTGAACAACCCGAGGGACGG GCTTCTCCGAATGATCAAGTCACTTAATCCCAAGGTAACCACGTTGGTGGAGCAGGAATCAAACACCAACACGACTTCTTTCCTCACCAGGTTTGTAGAG ACCCTAGAATACTACCTGGCCATATTTGAGTCCATTGACGTGACCCTTGCTAGGGATAGGAAAGAGCGTATTGGGTTGGAGCAGCATTGCTTGGCTAGGG ACATGGTGAATGTGGTTGCCTGCGAGGGGAGAGAACGAGTTGAGCGACATGAAATGTTTGGGAAAGGGAAATCTAGGTTCACCATGGCTGGGTTCAAACA GTACCCTTTAAGTTCCTATGTGAACTCGGTGATCAAGAGCTTGCTGAAATGTTACTCGGAGCATTATACTTTGATGGAGAAAGATGGAGCCATGTTGTTG GGTTGGAAAGAAAGGAACCTGATCTCTGCTTCTGCCTGGTACTAG
AA sequence Show only first row Show all	>Lus10036623 pacid=23174399 polypeptide=Lus10036623 locus=Lus10036623.g ID=Lus10036623.BGIv1.0 annot-version=v1.0 MDTQQLFGFSTVTHSGMSYSSPYPTVSSLPDRRLLGSLKFEIGNSPTSSFSTQLDNETVSSVSDSHEQPSSTSDSHGESGRPNEQGKESSSRAWGQDEGR DSRPRAATLMSHPRQVEADAPVEKRHKVMAEESSSLQSSQPGNLKQLLIECAKVIAENNMGYFENLVDKARGEVWITGEPIQRLGAYLVEGLVARKQSSG SNIYRTLNCREPESKDLLSYMQILYEICPYLKFGYMAANGAIAEACRNAERIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDPLNKYARGGGL DAVGKRLAALCEKFNITVEFQGLPVFAPDVTRDMLDVRQGEALAINLPLQLHHTPDESVDVNNPRDGLLRMIKSLNPKVTTLVEQESNTNTTSFLTRFVE TLEYYLAIFESIDVTLARDRKERIGLEQHCLARDMVNVVACEGRERVERHEMFGKGKSRFTMAGFKQYPLSSYVNSVIKSLLKCYSEHYTLMEKDGAMLL GWKERNLISASAWY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	0	1
AT5G54165			unknown protein		Lus10023231 [exp]	1.4	0.9381
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	1.7	0.9281
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	2.0	0.9164
AT2G44260			Plant protein of unknown funct...		Lus10017582 [exp]	2.2	0.9155
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	2.8	0.9092
AT1G76070			unknown protein		Lus10021840 [exp]	3.0	0.9026
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	3.7	0.9350
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	4.2	0.9148
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	7.0	0.9118
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	7.1	0.8777

Compare expression of checked genes

Lus10036623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.