Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74840 155 / 4e-46 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 154 / 3e-45 MYB Homeodomain-like superfamily protein (.1.2) AT1G70000 140 / 3e-40 MYB myb-like transcription factor family protein (.1.2) AT5G47390 116 / 4e-30 MYB myb-like transcription factor family protein (.1) AT3G16350 114 / 4e-29 MYB Homeodomain-like superfamily protein (.1) AT5G58900 107 / 2e-27 MYB Homeodomain-like transcriptional regulator (.1) AT5G04760 104 / 9e-27 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 105 / 2e-26 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 102 / 2e-25 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G61620 102 / 3e-25 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010733 [exp] 144 / 2e-41 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10013289 [exp] 138 / 7e-39 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 136 / 7e-39 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 135 / 1e-37 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10037560 [exp] 119 / 4e-31 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10004248 [exp] 119 / 7e-31 AT5G47390 128 / 1e-33 myb-like transcription factor family protein (.1) Lus10006826 [exp] 114 / 2e-29 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10004384 [exp] 112 / 1e-28 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10040181 [exp] 112 / 1e-28 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191800 [exp] 154 / 8e-45 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 149 / 8e-43 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.012G073900 [exp] 146 / 7e-42 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2) Potri.015G069000 [exp] 144 / 7e-41 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 114 / 3e-29 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 113 / 6e-29 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 111 / 4e-28 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.006G230500 [exp] 108 / 6e-28 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.003G049100 [exp] 110 / 1e-27 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 105 / 2e-26 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036652 pacid=23174387 polypeptide=Lus10036652 locus=Lus10036652.g ID=Lus10036652.BGIv1.0 annot-version=v1.0 ATGGCCGCTAGCAACACTGCCGCCGGTGTCGTGGGCTCTCCCGGTGAGATCATGCTGTTTGGAGTGAGGGTGGTGGTTGATTCCATGAGGAAGCGCGTCA GTCTCAACAATCTTTCCCAGTACCAACAACAGCACCCTTCTGCCAAAGATAAGGATGAGGTTGTCGCCGCCGCTGGCTACGCTTCCGCAGACGACGCCCC TCGCTCGGAGCGGAAGCGAGGGGTGCCATGGACGGAAGAGGAACACAAGCTGTTCCTAATCGGATTGGACAAGGTAGGAAAGGGGGACTGGAGAGGGATT TCTCGCAATTTCGTCAAGACTCGAACTCCTACACAGGTCGCCAGTCACGCGCAGAAGTACTTTCTCCGCCGACTCAATCTAAATCGCCGTCGCCGCAGAT CTAGCCTCTTTGATATCACTACTGATACGGCGACTGGGATTGAAGATCAAAGCAATCCGAAAGAGAAGATGTTGGGGTCAAACCTATTGGTAGTAGCAGC TGAACCCACCAAGTCCAAGAATAGTAGCACTACCATTAACAACTTCGTCCCTGCTGCAGTGATGTCAGCTTTCAGCTTATCCAGCAGCAGCAGTCCGACT GGTGAGATTCCTGTGGATAACTTATCATCAGGACAACAACAATGCATTAATAATGGAGGCTCACCTCATCAAAACCTTATCCTCCCAGTACAACATGTCG ACGACCCATCATCCTATACCCATACTACTACTACCTCATCGTCAAGGATGATTGACTTAAATCTGAGCTCGCCTCCTGCTGACCCGTTCCCATTGTCATT GAGTCTGTCATCATTGACATCTGATCAAAGGCACTTTGCGTACCGGACGATGATGGCGACAGCATTATCAGCGTAG
AA sequence Show only first row Show all	>Lus10036652 pacid=23174387 polypeptide=Lus10036652 locus=Lus10036652.g ID=Lus10036652.BGIv1.0 annot-version=v1.0 MAASNTAAGVVGSPGEIMLFGVRVVVDSMRKRVSLNNLSQYQQQHPSAKDKDEVVAAAGYASADDAPRSERKRGVPWTEEEHKLFLIGLDKVGKGDWRGI SRNFVKTRTPTQVASHAQKYFLRRLNLNRRRRRSSLFDITTDTATGIEDQSNPKEKMLGSNLLVVAAEPTKSKNSSTTINNFVPAAVMSAFSLSSSSSPT GEIPVDNLSSGQQQCINNGGSPHQNLILPVQHVDDPSSYTHTTTTSSSRMIDLNLSSPPADPFPLSLSLSSLTSDQRHFAYRTMMATALSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	2.0	0.8620
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	3.9	0.8351
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	4.9	0.8477
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	5.7	0.8506
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	6.5	0.8501
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	7.7	0.7954
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	10.1	0.7487
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	11.8	0.8243
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	13.2	0.7591
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	13.5	0.7628

Compare expression of checked genes

Lus10036652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.