Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70000 170 / 2e-52 MYB myb-like transcription factor family protein (.1.2) AT5G47390 149 / 3e-43 MYB myb-like transcription factor family protein (.1) AT1G74840 135 / 5e-39 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 135 / 2e-38 MYB Homeodomain-like superfamily protein (.1.2) AT3G16350 136 / 5e-38 MYB Homeodomain-like superfamily protein (.1) AT5G61620 118 / 1e-31 MYB myb-like transcription factor family protein (.1) AT5G56840 106 / 4e-28 MYB myb-like transcription factor family protein (.1) AT2G38090 106 / 2e-27 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G08520 106 / 3e-27 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 105 / 3e-27 MYB Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010733 [exp] 329 / 8e-115 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10013289 [exp] 205 / 1e-65 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 200 / 1e-63 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036652 [exp] 149 / 1e-43 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10037560 [exp] 146 / 9e-42 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10040181 [exp] 142 / 2e-40 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 142 / 2e-40 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10038279 [exp] 141 / 6e-40 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 132 / 1e-36 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039233 [exp] 193 / 7e-61 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 192 / 1e-60 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.003G079500 [exp] 144 / 2e-41 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 139 / 9e-40 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 139 / 3e-39 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 135 / 6e-38 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.015G069000 [exp] 133 / 2e-37 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.012G073900 [exp] 126 / 5e-35 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2) Potri.006G230500 [exp] 115 / 4e-31 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 114 / 4e-30 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036678 pacid=23170997 polypeptide=Lus10036678 locus=Lus10036678.g ID=Lus10036678.BGIv1.0 annot-version=v1.0 ATGTCTATCAATTCCGGCGATGGAAGCTCCTGCGGCGGCCATTGCAGCCCTGCGGCGGCGGAGAACGGAATCATGCTGTTCGGAGTTCGAGTCACCCAAG GGATGAACTCGTTCCGTAAGAGCGCGAGTATGCACAACTTGTCCCAGTACGATCAGGCCAATCAGGACCACAACGACGCCGTTCAGGCGTCTGGTTATGA GTCCGACGACGTGGTCCACCCCTCCGCGAGAAGCAGCGACCGTAAACGAGGGGTGGCGTGGACAGAGGAGGAACATAGATTGTTCCTGGTGGGGCTACAG AGAGTCGGGAAAGGAGATTGGAGGGGGATCTCGAGGAACTTCGTGACGACGAGGACTCCGTCGCAGGTAGCGAGTCACGCTCAGAAGTATTTCATCCGGC GGAACAACCAGAATCGGCGGCGGCGGAGGTCCAGCCTCTTCGATATCACGACCGAGTCAGTGAGTTCCCCCAATTTTGTTTCTAGGTTAAAAATTGCGGG GGAGATATCAACATCGCCGAATCAAGAGTCGGCGATAACCCAAATCGAGAAGTTGCCAGTCGACGGAGAGGACTCGTTGGAGAAGCTGACTTTAGGTCCG GGTAACGTTTCCCGTCCGATACAGGCAATTCCGCCTTCGTCCAAGATGGCTGGTCTAGTTTGGGCCGGAGTGGCAGTGAGGAACAGTTATTGCCTCTGTC GCTGA
AA sequence Show only first row Show all	>Lus10036678 pacid=23170997 polypeptide=Lus10036678 locus=Lus10036678.g ID=Lus10036678.BGIv1.0 annot-version=v1.0 MSINSGDGSSCGGHCSPAAAENGIMLFGVRVTQGMNSFRKSASMHNLSQYDQANQDHNDAVQASGYESDDVVHPSARSSDRKRGVAWTEEEHRLFLVGLQ RVGKGDWRGISRNFVTTRTPSQVASHAQKYFIRRNNQNRRRRRSSLFDITTESVSSPNFVSRLKIAGEISTSPNQESAITQIEKLPVDGEDSLEKLTLGP GNVSRPIQAIPPSSKMAGLVWAGVAVRNSYCLCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	0	1
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	2.8	0.8453
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	4.2	0.8573
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	6.0	0.8537
AT1G27300			unknown protein		Lus10015771 [exp]	9.2	0.8385
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	13.5	0.8252
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	14.4	0.8207
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	15.9	0.8611
AT4G13530			unknown protein		Lus10041074 [exp]	16.5	0.8360
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	16.9	0.7879
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	16.9	0.8144

Compare expression of checked genes

Lus10036678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.