Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69580 256 / 2e-84 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 204 / 4e-63 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 202 / 2e-62 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 193 / 3e-60 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 184 / 8e-57 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 169 / 5e-50 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G45580 150 / 6e-44 GARP Homeodomain-like superfamily protein (.1) AT3G12730 142 / 3e-41 GARP Homeodomain-like superfamily protein (.1) AT2G01060 141 / 4e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 139 / 4e-38 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037169 [exp] 536 / 0 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 213 / 2e-66 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 212 / 4e-66 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10016676 [exp] 191 / 9e-59 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 189 / 3e-58 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 169 / 5e-49 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 168 / 1e-48 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 160 / 2e-47 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 157 / 2e-46 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167901 [exp] 307 / 3e-104 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 300 / 1e-101 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 212 / 4e-66 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 209 / 9e-65 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 196 / 4e-61 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 194 / 3e-60 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 171 / 6e-51 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 167 / 3e-49 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 164 / 4e-49 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 156 / 8e-46 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10036758 pacid=23171170 polypeptide=Lus10036758 locus=Lus10036758.g ID=Lus10036758.BGIv1.0 annot-version=v1.0 ATGAACTTGGTTCTTTCAACTGATGCAAAGCCTAGGCTGAAATGGACTGCTGATCTACACAGCCTGTTCATCGATGCTGTCAATCGACTTGGCGGTCCGG AGAAGGCAACACCAAAGAGTCTGATGAGGGTGATGGAGATTCCTGGATTGACTTTGTACCATCTCAAGAGCCATTTGCAGAAGTATAGACTTGGCAAAAG CCAGCAATCCCTGAATAGCATTGAAACAAAACAAGAAATTCTCTTTGATGCAGAGAGTCAACGGGTTCAAAGCAAGGAAACCAGTACTGATGGATATAAC AAACCAATCAAAGAAAGCCTGCAGATTGCTCATGCTCTCCAAGTACAAATGGAAGTGCAGAGAAAACTCCATGAACAAATTGAGGTTCAGAGACATTTGC AGCTGAGAATAGAGGCTCAAGGGAAGTATCTACAGTCAGTTCTGAACAAAGCACAGGAAACTTTGGCAGGGTATGGTTCATCTTCGGTTGGGATAGAGCT TGCAAAAGCTGAGCTCTCTAAACTGGTCTCCATGGTGAATTCAGGATGCACGAGTTCGTGTATTTCAGACCTCTCGGATGCAGAAGCAGGTTCGTCCAGC CCGGGTAGGAAACTGGTCAACAAGACCGCGGTGTGCTCAGTGGAAAGCTCTTTGACATCAGCTGAAAGTTCAGATGAAATGGAACAAAAGTCAAATCATG GTACTTCAAACAATCAAGGGAAGAAAAGGAGAAATGGGAAGATTGCAGAGCAGCCAATGGCTAAGAGATTCAGAAGCTCTGAGATGTTAATAACCACATT TGATCTGAACAGGAAGTGCGAAAACGACATCATCGAGACGGGTCCAAGAACGATCGACTTGAACAGCAATGGAGTTTGA
AA sequence Show only first row Show all	>Lus10036758 pacid=23171170 polypeptide=Lus10036758 locus=Lus10036758.g ID=Lus10036758.BGIv1.0 annot-version=v1.0 MNLVLSTDAKPRLKWTADLHSLFIDAVNRLGGPEKATPKSLMRVMEIPGLTLYHLKSHLQKYRLGKSQQSLNSIETKQEILFDAESQRVQSKETSTDGYN KPIKESLQIAHALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLNKAQETLAGYGSSSVGIELAKAELSKLVSMVNSGCTSSCISDLSDAEAGSSS PGRKLVNKTAVCSVESSLTSAESSDEMEQKSNHGTSNNQGKKRRNGKIAEQPMAKRFRSSEMLITTFDLNRKCENDIIETGPRTIDLNSNGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	2.6	0.9286
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	3.2	0.9080
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	6.5	0.9053
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	7.2	0.9145
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	7.7	0.9114
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030716 [exp]	9.0	0.8329
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	9.8	0.8737
					Lus10025141 [exp]	10.0	0.9084
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	11.2	0.8734
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	11.7	0.8737

Compare expression of checked genes

Lus10036758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.