Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 679 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 643 / 0 AAP2 amino acid permease 2 (.1) AT1G44100 639 / 0 AAP5 amino acid permease 5 (.1) AT5G63850 638 / 0 AAP4 amino acid permease 4 (.1) AT1G10010 529 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 524 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 523 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G23810 426 / 4e-146 AAP7 amino acid permease 7 (.1.2) AT5G40780 168 / 7e-47 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 161 / 2e-44 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037150 [exp] 893 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 788 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 786 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 706 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 701 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 629 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 624 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 567 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 539 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 689 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 681 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 680 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 678 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 673 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 673 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 672 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 665 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 634 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 543 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10036777 pacid=23171338 polypeptide=Lus10036777 locus=Lus10036777.g ID=Lus10036777.BGIv1.0 annot-version=v1.0 ATGGTCGAGAGCGGCGTCAGTAACGGCAACGGGGACCACCGTCCCCTCGACGCCGAAGGCCGCCACCAAAGAACTGGAACCGTATGGACAGCGAGTGCCC ACATAATTACCGCCGTCATCGGCTCCGGCGTTTTGTCTCTCGCTTGGTCAACGGCTCAGCTTGGTTGGATTGCTGGCCCCACCGTTCTGTTTCTATTCTC CTTCGTCACTTACTATACCTCCGCCCTCCTCGCTGACTGCTATCGCTCCGGCGCCGGCGAGCGAAACTACACTTACATGGACGCCGTCAAATCCCATCTC GGCGATTTCCAGGAGAAGATTTGCGGGTACATCCAGTACGCCAATCTCTTCGGTACCGCCATCGGCTACACAATTGCGTCATCCATAAGCATGATGGCGG TGAAGAGAGCGAATTGTTTCCATAGAAGCGGAGGGAAAGATCCTTGCCACATGAATGCAAACCCTTACATGATTGCATTCGGAGTAGTTCAAATCCTCTT CTCCCAGATCCCTGATTTCGATCAGCTGTCATGGCTCTCGATCGTCGCCTCCGTTATGTCTTTCACTTACTCCTCCATCGGATTGGGTCTTGGCGTTGCT AAAGTCGTCGAGAACAAAACCGTTAAAGGAAGCCTCACCGGTGTCAGCATCGACGGCGCCGTTTCCCGCGCCGACAAGGTCTGGCGTGTCTTTCAGTCGC TCGGCAACGTTGCTTTCGCCTACTCCTTCTCCAACATCCTCATCGAAATTCAGGACACTGTAAAATCGCCACCATCAGAATCAAAGACAATGAAGAGAGC ATCCCTGATCAGCATATTCATAACCACCGTCTTCTACATGCTCTGTGGCTGCTTTGGATACGCCGCATTCGGAGACCAATCTCACGACAACCTCCTAACC GGATTCGGCTTCTACAACCCCTACTGGCTTCTAGACATTGGCAACGTGGCAATCGTAGTCCACCTCGTCGGGGCGTACCAAGTGTACGTCCAACCCATTT ACGCATTCGTCGAGAAAATCGCCGTCAACAAGTTCTCTGAGAGCTACTTCATCACCAAGGAAATGAGAATCCCGCTCCCCGGTGTAGGAGACCGACACTA CAATTTGAATCTCTTCAGACTCGTGTGGAGGACGGTGTTCGTGATCGTCACCACTCTGATTTCGATGCTATTGCCTTTCTTCGGCGATATCGTGGGCTTG CTTGGTGCGTTGGGGTTCTGGCCGTTGACAGTTTATTTCCCGGTTGAGATGTACATTGCGCACAAGAAGATTCCGAAGTGGAGCACTGTATGGGTTTCTC TTCAGATACTTAGTGTAGCTTGTTTGATTATTTCGATCGTCGCTGCCATCGGGTCGATTGTCGGGATATCTGTCAATGTTAAGTCGGCCAAGCCCTTCCA GACTACTTACTAG
AA sequence Show only first row Show all	>Lus10036777 pacid=23171338 polypeptide=Lus10036777 locus=Lus10036777.g ID=Lus10036777.BGIv1.0 annot-version=v1.0 MVESGVSNGNGDHRPLDAEGRHQRTGTVWTASAHIITAVIGSGVLSLAWSTAQLGWIAGPTVLFLFSFVTYYTSALLADCYRSGAGERNYTYMDAVKSHL GDFQEKICGYIQYANLFGTAIGYTIASSISMMAVKRANCFHRSGGKDPCHMNANPYMIAFGVVQILFSQIPDFDQLSWLSIVASVMSFTYSSIGLGLGVA KVVENKTVKGSLTGVSIDGAVSRADKVWRVFQSLGNVAFAYSFSNILIEIQDTVKSPPSESKTMKRASLISIFITTVFYMLCGCFGYAAFGDQSHDNLLT GFGFYNPYWLLDIGNVAIVVHLVGAYQVYVQPIYAFVEKIAVNKFSESYFITKEMRIPLPGVGDRHYNLNLFRLVWRTVFVIVTTLISMLLPFFGDIVGL LGALGFWPLTVYFPVEMYIAHKKIPKWSTVWVSLQILSVACLIISIVAAIGSIVGISVNVKSAKPFQTTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10036777 [exp]	0	1
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	7.1	0.9007
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	15.7	0.8866
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	18.7	0.8922
AT1G80950			Phospholipid/glycerol acyltran...		Lus10032707 [exp]	20.8	0.8701
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	21.5	0.8762
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	22.1	0.8942
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	25.5	0.8866
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	30.5	0.8880
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	33.5	0.8902
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	37.4	0.8856

Compare expression of checked genes

Lus10036777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.