Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 82 / 2e-17 AP2_ERF RAP2.11 related to AP2 11 (.1) AT4G11140 55 / 3e-08 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G27950 55 / 6e-08 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 55 / 6e-08 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G72360 54 / 6e-08 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G53290 53 / 2e-07 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT1G28370 51 / 2e-07 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G28360 50 / 4e-07 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G53170 50 / 7e-07 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT5G18560 51 / 9e-07 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037137 [exp] 582 / 0 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10030430 [exp] 135 / 3e-35 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10012703 [exp] 100 / 6e-23 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10001298 [exp] 88 / 1e-20 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10010652 [exp] 81 / 1e-16 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10013614 [exp] 81 / 1e-16 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10039171 [exp] 75 / 2e-14 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10013764 [exp] 74 / 2e-14 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10041372 [exp] 69 / 7e-14 AT5G19790 102 / 1e-27 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091300 [exp] 123 / 8e-31 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.017G087800 [exp] 110 / 3e-26 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.003G220200 [exp] 83 / 2e-17 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 82 / 2e-17 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.019G036100 [exp] 79 / 4e-16 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G004700 [exp] 78 / 8e-16 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.001G453100 [exp] 74 / 5e-14 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.011G148900 [exp] 69 / 8e-13 AT5G19790 65 / 5e-12 related to AP2 11 (.1) Potri.002G153500 [exp] 69 / 9e-13 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.014G076702 [exp] 69 / 2e-12 AT5G19790 74 / 5e-15 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10036793 pacid=23171143 polypeptide=Lus10036793 locus=Lus10036793.g ID=Lus10036793.BGIv1.0 annot-version=v1.0 ATGAAGCAAGAAGTGATCAATGATCTTGAAACCGTTGATCATCACCAATATTCCACTTCCCCCACCATGGGAACAAAAAGGAAAGCTAACAACAACGATG ATGATCATCATCATCAAGAACCATCTCCGACCACCAACGGCGACGACAACAACGGCAACAACATGATGTCGTGGGACCAGATGATGGAGGAGGCAGCGGC TCTGGGCGGGGCACGAAGGGCTCGAAAGCGATTCGTGGGAGTGAGGCAACGTCCCTCGGGGAGATGGGTTGCGGAGATCAAGGACACGATCCAGAAGATT CGAGTCTGGCTCGGTACCTACGACACTGCTGAGGAAGCTGCCAAGGCCTACGACGAAGCTGCGTGCCTCCTACGTGGCGCCAACACTCGTACGAACTTCT GGCCTTGCTCGTCTCCCGATTCGAAACCGGTCCTCCCTCCCAAGATCACCAATCTCCTCCTCCTTCGGCTCAAAGCTAGGAACAAGGATTTAGCTACGGC CGAAGAGGGTGGTGGTGGTTGTTTCAATCCGGGCCTGTCGTCCGAGATCGATTTGAGTAGCGGGTCGTATTCGCCCGAGCATGATCAGGATCATGAGATG GATGGGGTTTTTCATAGCATGGGAGGAGGAGGAGGAGGAGAAGATCAGTACAGGAAAAACGACGCTGTTGCAGAAAACTCCATTAAGACGGTCTGTAATT CTATGGGGAACGCCGCCGTTGTGGGGAACTCCATTCAAACAGTCGTTAATACTTATGGAAAAGGCGACAAAATTAGCGACCAAATGATGTATTCGGTCCC TAATAGTATAAATTGCAGCGATCTATCATCTTACGGCGGTGAGAATAACTTGGGGAATTTGATGATCGACTTTCACCAATTCGACGGCCCTAATTCTTCC ACTGGTGATGGCACAGTGTCGACAGGGGGTTCTCAACCTTACTCTGCGTTCGACATTGCTCAGGAGATGATGGAGCCGTTAACGAAACAATTCTCACTGG ACGATGATCATCACAATGAAGACGGTCGTGCAAACGAGGCCCTTATAAATCAGAGCGATCGAAGCAACACTCGTGAAAATGGGGAAGATGATGATGATCA GGCATCAGCGTTGAGCGAGATCAGCAAGCGTTTGAACTACGAAAGGAACTTCTCCGCCTCGCTCTACGCCTACAATGGCGTCACAGAGTGCCTCACCAGG ACGGCGATCGAGAGGCATCGTGCAGCCGGAAGAAGCATTAGCGACGAAGGATCGGAGGATGTGAAAAAGGGTGATTTCACTATTAGTGACAAGCATTTTG GTAATGGCGACGGTGGTGCACAACCGGGGACGACGAAAAGCGGTAGCGGTACGGTGTCGTCGGGTTCTTCTTCGACGTCGTCTTCGTTAAATACGGAAGA AGATGTGGAGCTGTCCTTGTGGAGTTCTCTTGATCTTCCTTCACTTTGCTTCTCCATTTAG
AA sequence Show only first row Show all	>Lus10036793 pacid=23171143 polypeptide=Lus10036793 locus=Lus10036793.g ID=Lus10036793.BGIv1.0 annot-version=v1.0 MKQEVINDLETVDHHQYSTSPTMGTKRKANNNDDDHHHQEPSPTTNGDDNNGNNMMSWDQMMEEAAALGGARRARKRFVGVRQRPSGRWVAEIKDTIQKI RVWLGTYDTAEEAAKAYDEAACLLRGANTRTNFWPCSSPDSKPVLPPKITNLLLLRLKARNKDLATAEEGGGGCFNPGLSSEIDLSSGSYSPEHDQDHEM DGVFHSMGGGGGGEDQYRKNDAVAENSIKTVCNSMGNAAVVGNSIQTVVNTYGKGDKISDQMMYSVPNSINCSDLSSYGGENNLGNLMIDFHQFDGPNSS TGDGTVSTGGSQPYSAFDIAQEMMEPLTKQFSLDDDHHNEDGRANEALINQSDRSNTRENGEDDDDQASALSEISKRLNYERNFSASLYAYNGVTECLTR TAIERHRAAGRSISDEGSEDVKKGDFTISDKHFGNGDGGAQPGTTKSGSGTVSSGSSSTSSSLNTEEDVELSLWSSLDLPSLCFSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	0	1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	1.0	0.9556
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	2.0	0.8745
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	4.2	0.8524
AT5G57500			Galactosyltransferase family p...		Lus10025474 [exp]	5.1	0.8081
AT4G05030			Copper transport protein famil...		Lus10016059 [exp]	11.6	0.8245
AT5G03050			unknown protein		Lus10030557 [exp]	13.0	0.8058
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	13.0	0.8146
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	13.9	0.8238
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	14.3	0.8238
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	14.7	0.8238

Compare expression of checked genes

Lus10036793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.