Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 501 / 2e-176 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 473 / 2e-165 Transmembrane amino acid transporter family protein (.1) AT3G56200 306 / 2e-100 Transmembrane amino acid transporter family protein (.1) AT2G40420 289 / 9e-94 Transmembrane amino acid transporter family protein (.1) AT1G80510 288 / 8e-93 Transmembrane amino acid transporter family protein (.1) AT4G38250 76 / 1e-14 Transmembrane amino acid transporter family protein (.1) AT2G42005 61 / 6e-10 Transmembrane amino acid transporter family protein (.1) AT5G02170 50 / 3e-06 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 46 / 4e-05 Transmembrane amino acid transporter family protein (.1) AT2G41190 43 / 0.0005 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035140 [exp] 527 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 527 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 512 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 506 / 3e-178 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 424 / 3e-146 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 414 / 4e-142 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 328 / 1e-108 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 322 / 2e-106 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003054 [exp] 288 / 1e-92 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 519 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 497 / 5e-175 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 449 / 5e-156 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 333 / 6e-111 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 279 / 2e-91 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 279 / 5e-89 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 275 / 2e-87 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 66 / 1e-12 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 60 / 1e-09 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 58 / 7e-09 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10036845 pacid=23171004 polypeptide=Lus10036845 locus=Lus10036845.g ID=Lus10036845.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGAGCAATAGCAGCAGGGGAGGAGAACCCACTTCGCCATTGTTGCTTCCTCCTCACGAGGAAGAGTCATCCAATTGCGCCGAGAGAGCAG TCAGGGCTTCGTTCATGGGCTCAGTATTCAACCTTTCGACGACGATAATCGGAGCTGGGATCATGGCATTGCCTGCGACCATGAAGGTCCTAGGACTGGG ACTCGGAATTGGTCTCATCGTGTTCGTTGCTGTCCTCACTGAGCGGTCGTTGGAGATGCTGTTGAGGTACAGCAAGGCTGGGAAGGTGGATTCTTATGGT GGAGTTATGGGGGATGCCTTTGGGCGAAGTGGGAAGTTGCTGCTGCAGATTTGTGTGCTGCTTAATAACGTTGGTGTTCTTGTTGTTTACATGATCATCA TTGGCGATGTGCTGTCCGGGACATCTGCAAATGGGACTCATCAGAGTGGAGTTCTGGAAGAATTGTTCGGAACCCAGTGGTGGAATTGCCGTACTGCTGT CCTCCTCTTCATGACAGCTGCTGTGTTTGCTCCATTGTCATGTTTAAAGCGCATAGATTCGTTGAAGTTCTCATCAGCCATAGCAGTTGCACTTGCAGCA GTCTTCTTGTTCATAACAGCAGGAGTTGCAGCAGTCAAACTGGTCAATGGCGCCATCTCCATTCCTAGGTTGCTTCCTGATGTTACTGACATCACCTCAT TCTGGAACCTCTTCACCACTGTTCCTGTACTTGTCACAGCTTTCACATGCCACTTCAATGTTCATACGATCGAGAACGAACTCGAAGACCCTTCCAAGAT AAGAAAAGTGGTGCAAGCTTCACTAGCTCTATGTTCTTCTGCATACATAATGATCAGCCTTTTCGGGTTTCTTCTCTTTGGTGACTCGACACTTGACGAT GTGTTGGCCAATTTCAACACAGACCTTGCTGCTGGGATTCCTTACAGCACTGTGATCAACAATGTCGTTCGGATCAGCTATGCTCTCCACTTGATGCTTG TTTTCCCAGTCCTTTTCTACCCTTTGCGGTTGAGTATCGATGGCCTTCTCTTCCCATCGGCTAGCAGGCCATTGGGTTTGGATAACAAGAGGTTTGCTTT GATCACTGTTGCGCTCATTTGTATGATCTTTCTCGGAGCAGATTTTGTACCGAGTATTTGGGATGCTTTCCAGTTCACTGGTGCAACTTCTGCCGTTTGC CTTGGCTTCATCTTTCCTGCTGCAATTGCTCTGAGGGATCGGCATGGAATAGCAGCAAAAAAGAGAAGATATTGTCAGTGTTTATGA
AA sequence Show only first row Show all	>Lus10036845 pacid=23171004 polypeptide=Lus10036845 locus=Lus10036845.g ID=Lus10036845.BGIv1.0 annot-version=v1.0 MKEKSNSSRGGEPTSPLLLPPHEEESSNCAERAVRASFMGSVFNLSTTIIGAGIMALPATMKVLGLGLGIGLIVFVAVLTERSLEMLLRYSKAGKVDSYG GVMGDAFGRSGKLLLQICVLLNNVGVLVVYMIIIGDVLSGTSANGTHQSGVLEELFGTQWWNCRTAVLLFMTAAVFAPLSCLKRIDSLKFSSAIAVALAA VFLFITAGVAAVKLVNGAISIPRLLPDVTDITSFWNLFTTVPVLVTAFTCHFNVHTIENELEDPSKIRKVVQASLALCSSAYIMISLFGFLLFGDSTLDD VLANFNTDLAAGIPYSTVINNVVRISYALHLMLVFPVLFYPLRLSIDGLLFPSASRPLGLDNKRFALITVALICMIFLGADFVPSIWDAFQFTGATSAVC LGFIFPAAIALRDRHGIAAKKRRYCQCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	0	1
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	1.0	0.9871
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	2.0	0.9771
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	4.9	0.9751
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	7.5	0.9471
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	7.7	0.9630
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	10.0	0.9750
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	10.6	0.9611
AT5G41761			unknown protein		Lus10012634 [exp]	11.0	0.9561
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	11.0	0.9736
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	11.0	0.9580

Compare expression of checked genes

Lus10036845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.