Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 257 / 1e-79 GRAS RGL1 RGA-like 1 (.1) AT1G14920 246 / 3e-75 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 246 / 6e-75 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 243 / 1e-73 GRAS RGL2 RGA-like 2 (.1) AT2G01570 236 / 7e-71 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 219 / 2e-64 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50420 212 / 1e-62 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT2G04890 210 / 1e-62 GRAS SCL21 SCARECROW-like 21 (.1) AT5G41920 207 / 2e-61 GRAS GRAS family transcription factor (.1) AT5G48150 208 / 4e-61 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037055 [exp] 979 / 0 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10017930 [exp] 568 / 0 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10014786 [exp] 422 / 6e-144 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10031172 [exp] 314 / 3e-100 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10041540 [exp] 308 / 4e-97 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10031748 [exp] 304 / 3e-96 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10012554 [exp] 308 / 5e-96 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10022418 [exp] 244 / 2e-75 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10033583 [exp] 244 / 7e-74 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093900 [exp] 607 / 0 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 604 / 0 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 324 / 5e-105 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 298 / 3e-93 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 251 / 2e-76 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 247 / 2e-74 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 246 / 3e-74 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 239 / 2e-71 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 223 / 2e-66 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.002G073400 [exp] 216 / 4e-63 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10036932 pacid=23171080 polypeptide=Lus10036932 locus=Lus10036932.g ID=Lus10036932.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTTCCGATCCTTTCCTATCAGCTGACTTCAGCAGCAATGAAGGAAGTGTTATTAACTCAAGTGATCTTGATCTCAATCTGTGTCAGTTTC CATACTATCCGGCGTTCCAGGAGAAACGAACCGCCGATTACACCTTCGACGAGCCTAAACGCCAGAAGAGGCTCAAGAACGAGATCGGGGCGAGCAGCAA CGATGGCAGTTGTGTTTCAGATAGCAACAGCAGCTTCAACAGCTTGCCGAAGCTCCAGTTCCGGGACTATGTCTGGGCTTACGCGGAGAGGTTCTTGGCG ATCGAGGCCATGGAAGAAGCCGCGGCTACTCTGACAGTAGTGGGAGAAGAAGTTAGGATTGAGGATGTGAAGGAGGAAACAGGTGTGGATGGGATGAAAC TTGTTCAGCAGCTGATCGCCTGTGCCGAAGCTGTGGCCTGCCGGGACAAAGCTCATGCTTCGGTCTTGCTCTCCGAGTTAAGGTCGAACGCTCTTGTTTT CGGGACATCGTTTCAGAGGGTTGCTTCGTGCTTTGTGCAGGGGTTATCCGATCGACTCACGCTTGTTCAGCCCCTGGGAACCGTTGGAGTTTTGGGTTCG CAGGCTAATAAAGTTCCGTCCTTTTTGGCCGAAAAGGATGAAGCTTTAATGCTTGCTTACGAGCTTTGCCCTCAGATCCAGTTCGGACACTTTGTGGCAA ACACGGCAATCCTCGAAGCCCTTGAGGGAGAGAGTTCAATTCATGTTGTTGACCTTGGGATGACTTTGGGTCTCCCATACGGTCAGCAATGGCAGCAGCT GATGCACAGCTTGGCTAGCCGATCTACACGCAACAAACCGGCACCGCGCCTGCGAATCACCGGAGTCGGTTCCTCAGCAGAACGACTCCAGGCGATCGGG TTTGAGCTCGATTGCTACGCGGGGAGCCTGGGACTAAGTTTCGAGTTCATGTACATCAAGAGCAGCCTGGAAAGTCTCAAACCGGAGCATTTCGACGTTC AGGAAGGTGAATCGGTGGTCCTCAATAGCGTCCTCCAGATGCATTGCGTAGTGAAGGAGAGCCGTGGAGCTCTAAACTCAGTCCTCCAAGTACTCAACGA GCTCTCCCCGAAAGCCTTTGTTTTGGTTGAGCAGGACTCGAATCACAATGGCCCATTCTTCCTAGGAAGGTTCATGGAATCGCTGCATTACTACTCGGCC ATATTTGATTCGCTGGACTCGATGCTTCCCAAGTACGACACCAGGAGGGCCAAGATAGAGCAGTTCTACTTTGCTGACGAGATCAAGAACATCGTGAGCT GCGAAGGTTCTGCTAGAGTGGAGCGGCACGAGAGGGCTGATCAGTGGCGGAGGAGGATGAGCCGGGCCGGGTTCCAGGCCTCGCCGTTGAAGATGGTGGC TCAAGTTAAGCAGTGGATGGGTAAAGCCAAGTTCTGTGATGGGTATTCTGTGAATGAGGAGAAAGGGTGCTTGATTCTCGGGTGGCAATCTAGACCAGTC ATTGCAGCTTCTTGCTGGAAGTGCTCAAAGATTTAA
AA sequence Show only first row Show all	>Lus10036932 pacid=23171080 polypeptide=Lus10036932 locus=Lus10036932.g ID=Lus10036932.BGIv1.0 annot-version=v1.0 MVVASDPFLSADFSSNEGSVINSSDLDLNLCQFPYYPAFQEKRTADYTFDEPKRQKRLKNEIGASSNDGSCVSDSNSSFNSLPKLQFRDYVWAYAERFLA IEAMEEAAATLTVVGEEVRIEDVKEETGVDGMKLVQQLIACAEAVACRDKAHASVLLSELRSNALVFGTSFQRVASCFVQGLSDRLTLVQPLGTVGVLGS QANKVPSFLAEKDEALMLAYELCPQIQFGHFVANTAILEALEGESSIHVVDLGMTLGLPYGQQWQQLMHSLASRSTRNKPAPRLRITGVGSSAERLQAIG FELDCYAGSLGLSFEFMYIKSSLESLKPEHFDVQEGESVVLNSVLQMHCVVKESRGALNSVLQVLNELSPKAFVLVEQDSNHNGPFFLGRFMESLHYYSA IFDSLDSMLPKYDTRRAKIEQFYFADEIKNIVSCEGSARVERHERADQWRRRMSRAGFQASPLKMVAQVKQWMGKAKFCDGYSVNEEKGCLILGWQSRPV IAASCWKCSKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	4.5	0.6751
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	9.2	0.6910
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	19.4	0.6610
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	21.2	0.6395
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	27.4	0.6563
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	32.7	0.5887
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	37.7	0.6565
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	40.5	0.6558
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	41.8	0.6514
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	45.8	0.6544

Compare expression of checked genes

Lus10036932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.